Populus trichocarpa (black cottonwood): 18096693
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Entry
18096693 CDS
T01077
Name
(RefSeq) protein REDUCED CHLOROPLAST COVERAGE 3
KO
K03255
protein TIF31
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
pop03012
]
18096693
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
18096693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
eIF3_p135
TPR_10
TPR_NPHP3
TPR_2
CLU_N
TPR_9
TPR_8
PAM2
TPR_MalT
CLU
TPR_1
Motif
Other DBs
NCBI-GeneID:
18096693
NCBI-ProteinID:
XP_024453137
LinkDB
All DBs
Position
3:complement(3465684..3479242)
Genome browser
AA seq
1690 aa
AA seq
DB search
MAPRSGRGKSNKARAERKRKEEKSVPSVVDVTVITPYESQVVLKGISTDRILDVKKLLAA
SVQTCHLTNYSLSHEVKGHGLHDRVEIISLKPCLLKIIEEDYTEESQAVAHVRRLLDIVA
CTTRFSNKSRRPSQSISQSKRSNSSRSPRTSTPATPLSDDAASETTSVSAAMSESMDMAA
IHPTPKLSEFYDFFSFSHLPPPILDLRRCSEVKDGEERSRPGDYFEFQVKICNGKLIKVV
ASVKGFYAVGKQFSQSHSVVDLLQNLSRAFANAYDSLMKAFVEHNKFGNLPYGFRANTWL
VPPSVADSPSNFPSLPVEDESWGGNGGGQGRYGGYDLRPWATDFAILASLPCKTEEERVV
RDRKALLLHSQFVDVSIFKAVGAIQGVIDSNLQARDTISGSFLLEDHVGDLSIVVERDAA
DASLKTVVKVNGNHLSGIPAKEIAQRNLLKGVTADESVVVHDTSSLSTVIVRLCGYTATV
KVVGNVKKKKFDAQDIEIDDLPDGGANALNINSLRVLLHKCCSAESSLGQSSHSTLEELE
ASRCLIRKVIKESLTKQEEKPIASERSIRWELGSCWLQHLQKHEASKDTNSKSPEDNSEN
EQAVKGLGKEFKFLKKRDMKLTVTSTHDREEIESGLCSQAMGINAGQHSNDESNIGCELR
RLVSEEAFLRLKESGTGLHLKSADELLQTAYRYYDEVALPKLVTDFGSLELSPVDGRTLT
DFMHFRGLQMRSLGRVVELAEKLPHIQSLCVHEMVTRAFKHILKVVIASINNISDLSAAI
ASSLNFLLGSCGVEGSDQTMKDDHALKLQWLRTFLSQRFGWTLKDEFQHLRKLSILRGLC
HKVGLELVPRDYDMECSNPFRKCDIISVVPVCKNVGCSSADGRTLLESSKVALDKGKLED
AVNYGTKALAKMIAVCGPYHRTTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL
DHPDTMKSYGDLSVFYYRLQHVELALKYVNRALFLLQFACGLSHPNTAATYINVAMMEEG
MGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLKIL
QAKLGTEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASIASKGHLSVSDLLDYISP
DQDSRGSDALRKQRRAKVLQVSDKSYQVHQDVMVKDGLGNAMVMTDDGNTQEQGVDMIHN
EEAEENDDITKYRPTVAGEVVEETTSDEGWLEANPKGRSWKAAGRKSGRRRPALAKLNIN
TAEYSSNRERRYRSQIISPAQRKTPRTITMEVSPAKQSIELQAKATVSKPFCAPANLTAM
ASKSLSYKEVAVAPPGMALKPSQEIVEESSGAKPETQICGVVPETFKEEESNDIPVIDNK
PGPDEAEGTHESETQPEKSGPEVEEISSSNQEKYIEKNGSKLSAAAEPFNPGVCPLVHPL
NSASAPSIYDATASQGMLVVPAVAPPLARVPRGPRSPLYYRTAQSYHMRQGLLKYRTHLA
TQPRSMNPHAPEFVPSRAWQTNPENGDSAISTEMKSLLETSKAREEEEDFDEESGNEVQD
CSTKRTTSETEKAELARQILLSFIVKSVQNNIDGGSETLGSKRLDSSESSSDAIANDTAI
IKILYGNEGKTKLVTQSSDGEQLKTPDANKNNHGDGEGFIVVTKRRRNKQQFTNGVAGLY
NQQSLCAPVL
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaaggtcagggagggggaaatcaaacaaagctagagcagagaggaaaaggaag
gaggagaaatctgttcctagtgttgttgatgtcaccgtaatcaccccatatgaatcgcaa
gttgtgctcaagggcatctccactgataggatacttgatgtgaagaagttattggctgca
agtgtgcaaacatgtcatctcacaaactattctttatctcacgaggtgaaagggcatggg
ttgcatgacagagtagaaatcatctccttgaagccctgcctgctcaaaatcatcgaagag
gactacacagaggagtcacaagccgtagctcatgtacggaggctgctggacatcgtagcc
tgcacaaccaggttctccaacaaatccaggcgaccgtcacagtcaatatcacaatccaaa
cggtctaatagttctaggtctccacggaccagtactcctgcaacgccactgtccgacgat
gcagcatccgaaacgacgtcggtgtcggcggcgatgtcggagagtatggacatggcggcg
attcacccgacgccgaagctgtctgagttttatgacttcttctccttttctcacctcccg
cctcctattctcgatttgagacgatgcagtgaggttaaggatggagaggaaaggtcacga
ccgggtgattattttgaatttcaggttaagatatgcaatggaaagctaataaaggtggtt
gcttcagtaaaaggcttttatgcagtgggaaagcaattttcccaaagccattccgtggtg
gatcttcttcaaaatctcagccgagcttttgccaatgcatatgattcccttatgaaggct
tttgtagagcataataagttcggtaatcttccttacggatttcgtgcaaatacatggctt
gttcctccatctgttgcagactctccatcaaactttccatcccttcctgtagaagacgag
agctggggtggcaatggtggagggcaaggaagatatggtggatatgatcttcgaccttgg
gccactgatttcgcgatattggctagcctaccatgcaagacagaggaggagagagtggtg
cgagaccggaaggcccttttgcttcatagtcaatttgttgatgtttcaatttttaaagct
gttggagcgatacaaggtgttattgattccaatcttcaagcaagagatacaatttcaggc
tctttcttgcttgaagatcatgtaggagacttgtccatagttgtagaacgtgatgcagca
gatgcaagcttgaagactgtggtcaaagtcaacggcaatcacttatctggtatccctgct
aaggaaattgctcaaaggaatttgcttaaaggggtaaccgcagatgagagtgtagttgtt
catgatacctcttcattgagcactgtcattgtaagactttgtggatacactgcaacagtg
aaagttgttggcaatgtgaagaagaaaaagtttgatgctcaagatattgaaattgatgat
ctaccagatggaggagctaatgctcttaatattaacagtttaagggtgctgctgcacaag
tgttgcagtgctgaatcatctctaggacagtcttctcactctactttggaagagttagaa
gcatctagatgtcttattcggaaagtaattaaagagagtttaaccaagcaagaggagaag
ccaattgcttcagaaaggtctattagatgggaacttggctcgtgttggttgcaacatctg
caaaagcatgaagcctcaaaagataccaattctaaaagccctgaggataatagtgagaac
gaacaagctgtgaaaggtcttggaaaggaattcaaatttttgaagaagagggatatgaag
cttactgtgacttccacacatgatagagaagaaattgaatctggcctgtgcagccaagct
atgggaattaatgccggacaacatagcaatgatgagtccaacattgggtgcgaattgagg
agattggtttctgaagaagccttcttgcgtctgaaagaatctggaactggccttcattta
aagtcagcagatgagcttcttcaaacagcatacagatattatgatgaagttgcattgcct
aagctggtaacggattttggctcccttgaactttcgcctgttgatggtcgcacgctgact
gacttcatgcattttaggggactgcagatgcgctctttgggacgggtggttgaacttgca
gagaagcttcctcacatacaatcactttgtgttcatgagatggttactcgagctttcaag
cacatacttaaagtggttattgcatctatcaacaatatatcagacttgtctgcagccata
gcttcatccctaaatttcttgcttggaagttgtggggttgaaggcagtgatcaaactatg
aaggatgaccatgctctcaaattgcagtggttgcgaacatttctttcccagagatttggt
tggacactgaaagatgaatttcagcatttgagaaagctttcaattcttcgtggactttgc
cataaggttggattggagttggttccaagagattatgacatggagtgctcaaaccccttt
aggaaatgcgacattatcagtgtagttcccgtgtgtaagaatgtaggatgctcttcagct
gatggacggactctgttggagtcgtcgaaggtcgctcttgataaaggaaagcttgaggat
gctgttaattatggaacgaaggctctagcaaagatgatagctgtatgtggtccctatcat
cggactactgccagtgcttacagtcttctagctgttgttctctaccacacaggagacttt
aatcaggctactatataccagcaaaaggctttggatatcaatgagagggaacttggtctt
gatcatccagatacaatgaaaagctatggtgatctttctgtgttttattatcgtcttcaa
catgttgagttagctttgaaatatgtgaaccgtgctttattccttcttcaatttgcttgt
ggtctgtctcaccctaataccgccgctacatacatcaatgtggctatgatggaagagggt
atgggaaatgttcatgttgctctcagatacctgcatgaagctctaaagtgcaatcaaaga
ttgttaggggcagatcatatacagacagctgcaagctaccatgctatagccattgctctt
tctctgatggaggcatattccttaagtgttcaacatgagcaaacgacactcaagatactt
caggcaaaacttggaacggaggatcttcgtactcaggatgctgctgcatggcttgaatat
tttgaatcaaaagccctagagcagcaagaagcagcacgaaatggaactccaaagccagat
gcatccatcgcaagcaaaggtcaccttagtgtatcagatctcctggattacattagtcct
gatcaagactctagaggaagtgatgcactcaggaaacagcgtcgtgcaaaggtactccag
gttagtgataagtcctatcaagtccatcaagatgtaatggtcaaagatggcttgggaaat
gcaatggttatgacagatgatggcaacactcaagaacaaggggtggatatgattcataat
gaagaagcagaggaaaatgatgatatcaccaagtacaggcccacagttgcgggggaagtt
gttgaagaaacaacttcagatgaaggatggctagaagccaatccaaaaggacggtcatgg
aaagctgctggcaggaaatctggccgtagacgaccagctcttgcaaagctaaacataaat
actgcagaatattcgagtaatagagaaagaaggtataggagtcaaatcatttccccggca
caaagaaaaactccaaggacaattacaatggaggtgtcacctgcgaagcaatcaattgaa
ctgcaggcaaaagctactgtctccaaacctttttgtgctccggcaaatctcactgctatg
gcatcaaaatcgctctcttacaaagaagtagctgtggcaccccctggtatggctttgaag
ccatctcaggagatagtagaagaatcaagtggggcaaaacctgaaactcagatatgcggc
gttgtacctgagacatttaaggaggaggaaagcaatgatatccctgttattgataataaa
ccaggtcctgatgaagcagaaggaactcatgaaagtgaaactcaacccgaaaaatctggc
cctgaagttgaggaaatttcttcttctaatcaggaaaagtacattgagaaaaatggaagt
aagctttcagctgcagctgaaccattcaatccaggagtgtgcccactggttcacccttta
aactcagcttctgcaccaagcatatatgatgcgacagctagtcaaggaatgcttgtagtc
ccagcagtggcacctccacttgcaagagttcctcgtgggcctaggtcaccgctgtattat
agaactgctcaatcttaccacatgagacaaggtctcctgaaataccgaactcatttggca
acacaacctagaagcatgaacccacatgcacctgagtttgttcccagtagagcttggcaa
acaaatcctgaaaatggagattctgctatttcaaccgagatgaaatctttgcttgagaca
agcaaggcaagagaggaagaggaggactttgatgaggaatccggtaatgaagttcaagat
tgttctacaaaaaggacaacctctgagaccgagaaggcagaacttgcaaggcagatattg
ctcagtttcattgtgaagtcagtacagaataatattgatggtggaagcgagactctaggc
agtaaaaggcttgacagttcagaaagttcttcggatgcaatagctaatgacactgcaatt
ataaaaatcctctatggaaatgaaggaaagacaaaattggttactcagtccagcgacggt
gaacagctgaaaaccccagatgctaataaaaacaatcacggtgacggtgaaggatttata
gttgtgacaaagcggagaagaaacaaacagcagttcacaaacggggttgctgggttgtac
aaccagcaatcactctgcgcacctgttctttga
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integrated database retrieval system
