Populus trichocarpa (black cottonwood): 18096694
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Entry
18096694 CDS
T01077
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
18096694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
18096694
Enzymes [BR:
pop01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
18096694
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
18096694
DNA repair and recombination proteins [BR:
pop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
18096694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
Motif
Other DBs
NCBI-GeneID:
18096694
NCBI-ProteinID:
XP_006385295
UniProt:
U5GP93
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All DBs
Position
3:3499850..3504746
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AA seq
407 aa
AA seq
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MPELPEVEAARRAIEEHCIGKKIKKAIIADDSKVIDGVSPSDFVAALVGKTIVSALRKGK
NLWLQLDSPPFPSFQFGMAGAVYIKGVAVTKYKRSAVNDSDEWPSKYSKFFVQLDDGLEL
SFTDKRRFAKVRLLEDPASKPPISELGPDALLEPMTVDELHGSLSKKKVAIKALLLDQSF
VSGIGNWIADEVLYQARIHPLQIASSLSRESSATLHKCIKEVIEKAVEVGADSSQFPNNW
IFHSREKKSKKTFIDGKEIDFIVAGGRTTAYVPGLQKLNGNQAGKAVGKPKARTSKKKRD
GDDDDNDNNEDGGSEPTSEDEKIARKAKSKRELRPKGPGKKPSAKRKSKASDTDSEEDEG
AATAAAADDDQKKKPRRVTSRKQVMVGKAPKKLVNNQNTNKPRKKVK
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctaccggaggtagaggcggcgagaagggcgatagaggaacattgcataggg
aagaagataaagaaggccatcattgccgacgacagtaaagtcatcgatggagtctctcct
tctgattttgtggcagcacttgttggcaaaactattgtctctgctcttagaaagggaaag
aacttgtggctccaactcgactcccctcccttcccttcctttcagttcgggatggctggg
gctgtatatattaaaggagttgcggttaccaaatataaaaggtctgcagtaaatgactct
gatgagtggccttccaaatattcaaagttttttgtccaactagatgatggtctggagctt
tctttcactgacaagaggcgatttgctaaagtccgcttgcttgaagatccagcttctaag
cccccgatatctgagttgggccccgatgcattactggagccgatgacagttgatgaactt
catggatccctaagcaagaagaaagttgcaattaaggctctattacttgatcagagtttt
gtatctggaattggtaactggattgcagatgaagtgctataccaagctagaattcatcca
ctgcagattgcttccagcttatccagagaaagttctgcaactttacacaagtgcatcaag
gaggtgattgaaaaagcagtagaagttggggcagatagtagtcagttcccaaacaattgg
atttttcattctagggaaaagaagtctaagaagactttcattgatgggaaggagattgat
tttattgttgctggtggtaggacaacggcctatgtaccggggttacagaagctaaatgga
aaccaagctgggaaagcagtgggaaaaccaaaagcaagaacttcaaagaaaaaaagagat
ggggatgatgatgacaatgacaacaatgaagatggtggcagtgaaccaacttccgaggat
gaaaaaattgcaagaaaggccaaatcaaagagagagttgaggcctaaaggtcctgggaaa
aagccttcagctaaaagaaaatccaaagcaagtgatactgacagtgaagaagatgagggt
gctgccaccgccgccgccgccgacgacgatcaaaagaaaaaacctagaagagtgaccagc
agaaaacaagtcatggtaggtaaagcacccaagaaattggttaacaatcaaaatactaac
aaaccaaggaagaaagtgaagtag
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