Populus trichocarpa (black cottonwood): 18096730
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Entry
18096730 CDS
T01077
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18096730
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
18096730
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18096730
03036 Chromosome and associated proteins [BR:
pop03036
]
18096730
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
18096730
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
18096730
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
18096730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ComGF
DUF5899
Motif
Other DBs
NCBI-GeneID:
18096730
NCBI-ProteinID:
XP_006385335
UniProt:
U5GPC8
LinkDB
All DBs
Position
3:complement(3920801..3930697)
Genome browser
AA seq
513 aa
AA seq
DB search
MNGGDEVGEAPPVPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDRSGDHLATGDRGG
RVVLFERTDTKDHGGSRRDLERMGYPISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK
IRWCQTTNGALFLLSTNDKTIKYWKVQEKKVKKISEMNVDPSKAIGNGSIASSSNSSIGK
QYLANGGGKYDLPSNDFSIPPGGFPSLRLPVVVTSDETSLMASCRRVYAHAHDYHINSIS
NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPGHCNTLAY
SSSKGSIRLIDLRQSALCDSHAKLFEETEAPGSRSFFTEIIASISDIKFARDGRHILSRD
YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSN
LFRVFGCNLESTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRAGAEGPGVDPNGN
SFDFSTKLLHLAWHPTENSIACAAANSLYMYYA
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtggagatgaagttggtgaagctccgcctgttccaccacagcctctggagtgg
aaattctctcaggtcttcggtgaacgaaccgccggtgaagaagtgcaagaagttgatatt
atttcagcaattgaatttgatagaagtggtgatcatcttgctaccggtgaccgtggaggc
cgtgtggttctctttgagagaactgacactaaggatcatggtggatccagaagggatctg
gagaggatgggttacccaattagtaggcatcctgagtttcgatataaaacagaatttcag
agccatgaacctgagtttgactatctcaagagtttggaaatagaggagaaaattaacaaa
atcagatggtgccaaacaaccaatggtgctctttttctcctatctactaatgataaaacc
atcaagtattggaaggtccaagagaagaaggtgaagaaaatttctgaaatgaatgtggac
ccttctaaagctataggaaatggtagcattgccagttcaagcaattcaagtattggtaaa
caatatcttgcaaatggaggaggcaagtacgatttaccaagcaatgacttcagcattcct
cctgggggctttccatcattgcgtttaccagtggtagtgacgtccgatgagacaagcttg
atggctagttgtcgaagggtatatgctcatgctcatgattatcatattaattcaatttca
aacaacagtgatggtgaaacttttatatccgccgatgacctacgaataaatctttggaat
ttggaaattagcaatcaaagtttcaatattgttgatgtcaaacctgcaaatatggaggat
cttactgaggttataacatcagcagaattccaccccggtcattgcaatacgttagcatac
agcagttcaaaaggctcaattcgactcattgatttgcgacaatcagctttgtgtgactct
catgccaaattgtttgaggaaacagaggcaccaggctcgagatcattttttacagaaata
attgcctcaatctctgatattaaatttgcaagggatggaagacatatactcagtcgtgat
tacatgactcttaagttgtgggatatcaatatggattctggtccagttgcaaccttccaa
gttcatgaacatttaagaccaaagttgtgtgatttatatgaaaatgattcaatctttgat
aaattcgagtgttgtttgagtggtgatggattgcgagttgcgacaggctcctacagcaat
ctgtttcgggtatttggttgtaacctagaaagtactgaggcaacaactttggaagccagc
aaaaatccaatgaggagacaagtccagaccccttcaaggccttcaagatccctaagcagc
ataacacgtgttgtaagacgggcaggagcagaaggcccaggagttgatccaaatggaaat
tcttttgatttctccacaaagttgttgcacttagcatggcatcctactgaaaattccatt
gcctgtgctgccgcaaacagcttgtacatgtactatgcataa
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