Populus trichocarpa (black cottonwood): 18096751
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Entry
18096751 CDS
T01077
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
pop03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18096751
03083 Polycomb repressive complex
18096751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
18096751
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
18096751
Histone modification proteins
HAT complexes
HATB complex
18096751
HDAC complexes
Sin3A-HDAC complex
18096751
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
18096751
PRC2.2
18096751
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
18096751
Heterochromatin formation proteins
Other heterochromatin formation proteins
18096751
Chromatin remodeling factors
NuRD complex
18096751
NuRF complex
18096751
NuRF complex (fruit fly)
18096751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_DCAF12
ANAPC4_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
18096751
NCBI-ProteinID:
XP_024452805
LinkDB
All DBs
Position
3:complement(4327851..4334688)
Genome browser
AA seq
459 aa
AA seq
DB search
MGVNERYTQWKTLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSV
PNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNTNIVA
THTDSPDVLIWDVDSQPNRHAVLGATESCPDLILTGHKDDAEFALAMCPTEPFVLSGGKD
KLVVLWSIQDHISTLAAEPGLSKSPGSGGFPNKSASKAGGGNDKRTKSPSIGPRDVYQGH
TDTVEDVQFCPSSAQEFCSVGDDSCLVLWDARAGCTPVVKVEKAHNADLHCVDWNPHDVN
LILTGSADNSVHMFDRRNLNLGGVGAPVHKFEGHNAAVLCVQWSPDKSSVFGTSAEDGIL
NIWDYEKIGKKQDSTGLKVPTAPPGLFFRHAGHRDKVVDFHWNASDPWTIVSVSDDGEST
GGGGTLQIWRMIDLIHRAEEDVLVELENFKSHILACERS
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgaacgagagatacacacaatggaagactctggtccctgtcctctacgattgg
ctcgctaatcacaacctcgtctggccctctctttcttgccgatggggtccacagcttgag
caagctacttacaagaatcgtcagcgcttgtacctctctgaacagacagatggcagtgtt
ccaaatactctggtcattgctaactgtgaagttgttaaaccaagggttgcagctgcagaa
cacatatcacagttcaatgaggaagcgcgctctccctttgtaaagaagtataaaactatt
atacaccctggcgaggtgaacagaatcagggaactcccacagaacaccaacattgtggct
acacacaccgatagtcctgatgttctcatttgggatgttgattctcaacctaatcgtcat
gctgtcctgggagctacagagtcttgtccagatctgatattgactggccataaagacgat
gctgaattcgctcttgctatgtgtccaactgagccctttgtgctctctggaggtaaggac
aagttggtggttttgtggagtattcaggaccatatttcaactttggcagcagagccaggg
ttgtcaaagtctcctggatctggtggcttccctaataaatctgcctctaaggcaggtgga
ggtaatgacaaacgtaccaagagtccttccattggaccacgggatgtctaccaagggcat
acagatactgttgaagatgttcaattctgcccatcaagtgcacaggagttctgcagtgtg
ggtgatgattcttgccttgtattatgggatgcaagagctggctgtactccagttgtcaag
gttgagaaagctcacaatgctgatcttcattgtgttgattggaatcctcatgatgtgaat
ctcattctgacagggtctgctgataattctgttcacatgtttgatcgtcggaacctcaat
cttggaggggtaggagcacctgttcataagtttgagggtcataatgctgcagtcctctgt
gtacagtggtctccagataaatcgtctgtcttcggcacttctgcagaggatggcattcta
aatatatgggattacgaaaagattggtaaaaaacaagattctactggactgaaagtgcca
actgctcctcccggattatttttccggcatgcgggccatcgggataaggttgttgacttc
cactggaatgcatctgatccatggacaattgtcagtgtgtctgacgatggtgaaagtaca
ggaggaggcggcactctacagatatggcgaatgattgatttgattcacagggccgaggag
gatgtcttggttgagcttgagaatttcaaatctcacattctcgcatgtgaaagaagttag
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