KEGG   Populus trichocarpa (black cottonwood): 18096800
Entry
18096800          CDS       T01077                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18096800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    18096800
   03041 Spliceosome [BR:pop03041]
    18096800
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     18096800
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     18096800
Spliceosome [BR:pop03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    18096800
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2
Other DBs
NCBI-GeneID: 18096800
NCBI-ProteinID: XP_006385422
LinkDB
Position
3:complement(4709095..4712531)
AA seq 418 aa
MSMDYDYPPQERQYGDNVLAFNRHSDEEHQQQQQQQEGFYEEEQQQQEGDIGSGGIERNL
SMNHHHHHHNRDSSSAGKLFVGGVSWETTEETFTNYFSKYGEVMDSVIMTDRHSGRPRGF
GFVTFADPAVADRVLEEDHVIDGRAVEVKRTVPREDMDVKGVTRTKKIFVGGIPPSLTED
ELKEYFSVYGSIVDHQIMLDHKTGRSRGFGFVTFDIEDAVEQIFSEGRTHELGGKQVEIK
KAEPKRTGGDYGSTAKSYTGFSNGAGGFGAGNGASGFGAGNSSVGRYGRKMGRGYDGYSG
YDGYGSYGSYGGNYPAGTAGFYGGYGAYGYGFGFGGPMMYGTGVYGGSGYGIPSSYNNAA
EYGGGKAYGRTGDDDGFGSGKRYDNGDALGGGYGSNKGYAGGANGGAAVTGRYHPYRK
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgtcaatggattatgattatccaccgcaagagaggcaatatggagataacgtccttgcc
tttaaccgccatagtgacgaagagcatcagcagcagcagcagcagcaagaaggtttttat
gaggaagaacagcaacagcaggagggggacataggtagtggaggaattgaaagaaaccta
tcaatgaatcatcatcatcatcatcacaatcgtgactcttcttctgcaggaaaactcttt
gttggtggtgtctcctgggaaactactgaagaaacgttcactaattactttagcaagtat
ggagaagtcatggactctgtaataatgactgatagacattctggaaggccacgagggttt
gggtttgtaacatttgctgaccctgcagttgctgatagggttttggaggaagaccatgtt
atagatggcagagcggtggaagtgaagaggacagttccaagggaagatatggacgttaaa
ggagtaacaagaacaaagaaaatttttgttggtggaataccaccttctttgactgaagat
gagttaaaggaatacttctctgtttatggtagcattgtagaccaccagattatgctagat
cataagactggaaggtctaggggatttgggtttgtcacatttgacattgaagatgctgta
gaacaaatcttttcagagggcagaacacatgagcttggtggtaaacaggtggaaataaag
aaggctgaaccaaagagaactggtggtgattatggcagtacagcaaagtcttatactgga
ttcagcaatggtgcaggtggctttggtgctggcaatggtgcgagtggctttggtgctggc
aatagttctgtaggtcgttatggtcgaaaaatgggcagaggatatgatgggtatagtggc
tatgatggttatgggagttatgggagttatggaggaaactaccctgcaggcactgctggt
ttttatggtggttatggtgcatatggttatggtttcgggtttggtgggccaatgatgtat
ggaactggtgtctatggaggaagtggttatggcattccaagtagttacaataatgctgcc
gagtatggtggtggtaaagcatatgggagaactggtgatgatgatggttttggcagcggt
aaaaggtatgacaatggcgatgctcttggtggtggctatggtagtaataaggggtatgct
ggcggtgcaaatggtggtgctgctgttactggaaggtatcatccttaccgtaagtaa

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