Populus trichocarpa (black cottonwood): 18096818
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Entry
18096818 CDS
T01077
Name
(RefSeq) chaperonin CPN60-like 2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18096818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18096818
03110 Chaperones and folding catalysts [BR:
pop03110
]
18096818
03029 Mitochondrial biogenesis [BR:
pop03029
]
18096818
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
18096818
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
18096818
Messenger RNA biogenesis [BR:
pop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
18096818
Chaperones and folding catalysts [BR:
pop03110
]
Heat shock proteins
HSP60 / Chaperonin
18096818
Mitochondrial biogenesis [BR:
pop03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
18096818
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
18096818
Exosomal proteins of other body fluids (saliva and urine)
18096818
Exosomal proteins of breast cancer cells
18096818
Exosomal proteins of colorectal cancer cells
18096818
Exosomal proteins of bladder cancer cells
18096818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF763
Motif
Other DBs
NCBI-GeneID:
18096818
NCBI-ProteinID:
XP_052307578
LinkDB
All DBs
Position
3:4454683..4474316
Genome browser
AA seq
572 aa
AA seq
DB search
MEQLIILYCASFVFLSFHSSSASKKQLSSRVTYSRSYVAKDINFGVGARAAMLQGVNEVA
EAVKVTMGPKGRHVIIEKSKDGVTVAKSIKFKEKAKSVGADLVKQVANATNTATGDGTTC
ATVLTQAILVEGCKSVSAGVNVMDLRSGINIAVGGVLSDLKKRALMISTPEEITQVATIS
ANGEREIGEMIARAMEKVGKHGVITVTDGNTLDNELEVVEGMKLARGYISPYFITDKKTQ
KCELENPLILIYDKKISDMNSLLRVLELAVKKSRALFIVAEDVESDSLAMLILNMHRAGL
KVCAIKAPGFGENRQANLDDLAVLTGVEVISENRGLTLDKVQIEMLGTAKKVTVSLDDTI
VLHGCGEKKLIEERCEQLRTAIEKSTALFDQEKAQERLSKLSGGVAVFKVGGASEAEVGE
RKDRVTDALNASRAAVEEGIVPGGGVALLYSTKALEKLQAQNEDEKRGIQLIQNALKAPA
HTIVSNAGFDSAMVLGKLLEQDDYNLGYDAAKGEYVEMVKAGIIDSFKVIRTAMVDAASV
SLLLTTTEATVLENPQEKKPPSRMPNMGDMGC
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggagcagctaataattctctactgtgcttcttttgtttttctatcttttcacagctcc
tctgcttcaaagaagcagttatccagtagggtcacatacagtagaagttatgtggctaag
gatatcaattttggagttggggctcgtgcagctatgctacagggtgtcaatgaggttgca
gaagccgtgaaagtcacaatgggaccaaagggccgccatgttattattgaaaaaagcaag
gatggagtcactgttgccaaaagcatcaagttcaaggaaaaggcgaagagtgttggtgca
gaccttgtgaagcaggtcgcaaatgctactaatactgccacgggggatggtacaacttgt
gcaactgtcctgactcaggctatactcgtcgaaggctgcaagtctgtatctgctggtgtg
aatgtgatggatttgcgtagtggcatcaatattgcggttggtggtgtcctttcagacttg
aaaaagagagcattgatgataagcacaccagaagaaattactcaggttgccactatctct
gcaaatggtgaacgtgagattggagaaatgatagcaagagcaatggagaaagttggaaag
catggagtgattactgtcactgatgggaatactttggataatgagttggaagttgttgaa
ggaatgaagctagctagaggctatatttctccctattttattactgataagaagacccag
aaatgtgaacttgaaaatccattaatcctcatttatgacaaaaagatttcagacatgaac
tcacttctgagagtattagagctggcagtcaaaaaaagcagagcactttttatcgtagct
gaggatgttgagagtgattccttagccatgcttattctcaatatgcatcgagctggactt
aaggtctgtgccattaaagctcctggttttggggaaaacagacaagcaaatttggatgat
cttgctgttttaactggtgtagaggttatcagtgaaaatcgtggtttaacccttgataaa
gtccaaattgaaatgcttggtactgctaagaaggtcacagtgtcacttgatgatacaata
gttcttcatggttgcggagaaaagaaattgattgaagaaagatgtgagcagctaaggaca
gccatagagaagagtactgccttgtttgaccaggagaaagctcaggaacgactgtcaaag
ctatctggtggtgttgctgtcttcaaggttggtggtgccagtgaggcagaagttggagag
aggaaagatagggttacagatgcattgaatgctagtagagcagcagtggaagagggtatt
gtgccaggtggtggtgttgctcttttgtattccacaaaagctctggaaaaacttcaagct
cagaatgaagatgaaaaaagaggcattcaactaatccagaacgccctcaaggcgccggca
catacaatagtttcaaacgctggatttgattctgctatggttcttggcaaattgttggag
caagatgattataatttgggttacgatgctgctaaaggtgaatacgtcgagatggtgaaa
gctggaattatagattccttcaaagtcatcaggacagccatggtagatgccgccagtgtt
tctttgctattgacaacaactgaggcgactgttttggagaatccacaggagaaaaaacca
cccagtcgaatgccaaatatgggtgatatgggctgttag
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