KEGG   Populus trichocarpa (black cottonwood): 18096825
Entry
18096825          CDS       T01077                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pop03036]
    18096825
   03400 DNA repair and recombination proteins [BR:pop03400]
    18096825
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    18096825
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     18096825
SSDB
Motif
Pfam: MMS19_N MMS19_C HEAT_EZ
Other DBs
NCBI-GeneID: 18096825
NCBI-ProteinID: XP_024453526
LinkDB
Position
3:7109628..7125601
AA seq 1147 aa
MAEPSQLTQHIESFVDSSCSSTQQAASLDAIVSFVKNDVVTISSLVREMEMYLTTTDSII
RARGVLLLGEALKCLSSKPLDAATIHSLMSFFKERLADWRALRGALVGCLALVKRKSGGM
VTSSDAKGVAESFLQNLQVQSLGQHDRKLCFELMECLLEYYPHAVASLGDDLIYGICEAI
DGEKDPQCLMLAFHIMEVLVQVFPDPCGPIESFASDLFGILSSYFPIHFTHPKAEEDVQV
KRDDLSRALMLAFSSSPLFEPSVIPLLLEKLSSSLSSAKVDSLKYLSYCTSKYGAERIAK
HAGAIWSSLKDVIFTSGQSFVLSFTPESLGGLGCQENEIAAEALALLEKVVIQNNDLFSS
MIVGDEEINMVLNSITGCQSYNEIPLQSTQKLYSVGRILYVSVKASVASCSRIFQYFFSC
LMESMGLPVVNGSGTCSFNDDCIISKRPNHGSLYLCVELLGACRDLVISSGDLASQCVSA
NETWCCLLQRFSTSLSKIFSSTLATSTDKPAHDADVYLGVKGLQILATFPGGYLLVSKST
CESILMTFVSIITVDFNKTLLWKLSVKALVQIGLFIHGSNESEKSMSYMDIVVQKIVSMI
SSDNHDIPFQLQLEAISDIGTSGLQYMLKIVTGLQEVIRANLAEVYVQGNVKSAKVIIHL
LECYSNELLPWIQKYEVFEEVLLQFVVSIWNQIENCMAFPDGIFEKELLDATMKVMKLAV
ASCSVESQNIIIDKAYTVLSSSTFLSTKDSLSSLQAQLEELEDTQETNKFSSRDEWIHSL
FISVIIALHPQTRIPNIRTVLHFLMIVFLKGYVTAAQALGSLVNKLDLKTSGTEYSGGCT
FEEAMDIIFGKNLSSSDHVSAGRSGITGYWSETGLTNLCLGAANSGLLEIHSIVGLAWIG
KGLLMRGHEKVKDITIVFLECLQSNGRRGALPLEENNCNWDMRLSAMKCAADAFQVLMSD
SELCLNRKFHAIIRPLYKQRFFSTIMPILQSLIIPSDSLLSRSMLYRAFANVVIGTPLIV
ILNDAKKLIPMVLDSLKLLSKDVLDKDIMYSLLLVLSGILTDKNGQEGVIENAHIIINYL
IGFVTYPHTMLVRETTIQCLVAMSELPHTRIYPMRIQVLQAVSKALDDPKRAVRQEAVRC
RQAWSVI
NT seq 3444 nt   +upstreamnt  +downstreamnt
atggcagaaccgagtcagctgactcagcatattgaatcttttgttgactcatcatgctcc
tctactcagcaggctgcaagtttggatgcaatagtttccttcgtgaagaatgatgtagta
actatatcatcactggttagggagatggagatgtatctgactacaacagatagcataatc
cgtgcacgaggcgtccttctgcttggagaagcacttaaatgtctttcatcaaagccgctg
gatgctgctactattcatagcttgatgtctttcttcaaagagcgactggcagattggaga
gctttacgtggtgcacttgttggttgtttggcattggtgaaaaggaaaagtggtggtatg
gtcactagcagtgatgctaaaggagttgcagagtcttttttgcaaaacttgcaggttcag
tctttaggacaacatgacaggaagctttgctttgaacttatggaatgtctgctagaatac
tatccccacgctgttgcttctctgggtgatgatcttatttatggaatttgtgaagctatt
gatggagaaaaggatcctcaatgcctaatgctagcatttcacatcatggaggttctagtg
caagtgtttcctgatccttgtggtcccatagaaagttttgctagcgatctatttggcatt
ttgagcagttactttcccattcattttacacatcccaaagctgaagaggatgttcaggtg
aaaagggatgatctttcaagggcattaatgcttgcattctcatcctcgcctcttttcgag
ccatctgtcattccgttgcttcttgagaaactttcttcctccctatcatccgcgaaggtt
gattctttaaagtaccttagctattgcacatcaaagtatggagcagaaagaatcgcaaaa
catgctggagctatttggtcttcactgaaagatgtaatatttacttcaggacaatcattt
gtgttatcctttaccccagaatccctaggtggtctaggctgtcaggagaatgaaatagca
gctgaagcactggctctactggaaaaggttgttatccaaaataatgatttgttctcaagt
atgattgttggtgatgaagaaataaatatggttttgaattccatcactggctgccagagt
tacaatgaaattcccttgcaaagcacacagaaactgtattcagtcggtcgtatcctttat
gtttctgtgaaggcatctgttgcttcctgcagtagaatttttcaatatttcttctcctgc
ttgatggagagcatggggcttccagttgtgaatggatctgggacttgctcttttaatgat
gactgcataatctccaaaagacctaatcacggatctctttatctctgtgttgaacttctt
ggagcatgcagagatttggtcatcagttccggtgatcttgcatcacaatgtgtttctgca
aatgagacatggtgctgcttgcttcagagattttctacctctttaagcaagattttcagt
tcaaccctggcaacaagtacagacaagcctgctcatgacgcggatgtgtatcttggagtg
aagggtttgcaaattctagctacattccctggaggctatttactagtatcaaaatctact
tgtgaaagtattttgatgacctttgtatctattatcactgttgatttcaataagacattg
ttgtggaaactgtcggtgaaggcactggttcagattggcttgtttattcatggtagtaac
gagtctgagaagtcaatgagctatatggatattgttgttcagaagattgtttcaatgata
tcatctgataatcatgatataccatttcaactccaactggaagccatctctgacattggc
acaagtgggcttcaatacatgctgaaaattgttactggattgcaagaagttatacgtgcc
aatctggctgaggtttatgttcaaggaaatgtgaaatcagcaaaggtcataattcatctt
ttggaatgttattcaaatgagttgcttccatggattcagaaatatgaagttttcgaggaa
gtcttgctccaatttgttgtcagcatatggaaccaaatagaaaattgcatggcctttcct
gatgggatctttgaaaaagagcttcttgatgctacaatgaaagtgatgaagcttgctgtt
gcttcttgttcagtggaaagccagaacataataattgataaagcttatactgtactctca
tccagcactttcttatcaacgaaggattccttgtcctctcttcaagctcaactagaagag
ttagaagatactcaagaaacgaacaaattttccagtagagatgagtggattcattcttta
tttatatcagtaattatagcacttcatcctcaaacacgcattccgaatataagaacagta
ctgcattttctcatgattgtgttccttaagggctatgttacggctgctcaggcgttaggt
tctctagttaacaaattggatctaaagactagtggaacagagtattcaggtggttgtacc
tttgaagaagcaatggatataatctttggtaaaaatttaagttcttctgaccatgtttct
gctgggagatctggtatcacaggctattggagtgagacaggtctcactaacttatgcctt
ggtgctgcaaacagtggtttgcttgaaattcattccattgttgggttggcatggattggg
aaaggtttgcttatgcgtggacacgaaaaggttaaagacataactatagtttttttagag
tgcctgcaatcaaatggcagaaggggtgccttgccattggaagaaaataattgcaactgg
gatatgcgcctgtctgcaatgaaatgtgcagcagacgcatttcaggttcttatgagtgat
tctgagctttgcttaaaccgcaaatttcatgcaataatacgaccactttataagcaacga
tttttctccaccataatgcccatcctgcagtctttgataattccgtctgactcgttactc
tcaagatctatgctgtatcgggcttttgcaaatgttgtaattggcaccccattgattgtt
atcttgaatgatgcaaaaaagttaattccaatggtgctggatagcttaaagttgttgagc
aaggatgttttggataaagatataatgtacagccttctgctagtcctgtcaggcattttg
acagataaaaatggacaagaaggcgtaatagagaatgctcatattatcatcaattacctc
attgggtttgtcacctaccctcatacgatgcttgtccgagagacaacaattcaatgtctt
gttgccatgtcagagttgcctcacacaaggatttaccccatgcgaatccaggtgttgcaa
gctgtatcaaaagctcttgatgatccaaagagggctgttcgtcaagaagctgttagatgt
cggcaagcgtggtcagtgatttag

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