Populus trichocarpa (black cottonwood): 18096835
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Entry
18096835 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18096835 isoform X1
KO
K17925
sorting nexin-13
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pop04990
]
18096835
Domain-containing proteins not elsewhere classified [BR:
pop04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
18096835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PXA
Nexin_C
PX
Motif
Other DBs
NCBI-GeneID:
18096835
NCBI-ProteinID:
XP_024453313
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Position
3:complement(7813114..7821442)
Genome browser
AA seq
1141 aa
AA seq
DB search
MNARMSTQRQVIVRDLVEEAKKRIVMLVICVVGLSYLMSLTSASVWVNLPAAASLIILLR
YFSLDYEMRKKAAVYNNKPASTTSSTLSQNKSLEFTRVVEKSDWRRKVNSPVVEDAIDHF
TRRLVSEWVTDLWYSRLTPDKEGPEELVQIMNGVLGEFSSRMRNVNLIDLLTRDFINLIC
THLELFRAIQAKMEKRQSSVLTIEQRDKELRHVLAAENKLHPALFSTEAEHKVLQHLMDG
LISFTFKPADLQCSFFRYVVRELLACAVMRPVLNLASPRFINERIESVVISKANQRVAAA
QETSHFKPNGSSRISSNHFSRFLDPTDTGVELVQLKTDQCRGGPDAPEKDKVNGSHISKD
PLLYIDTQSSRTWSSLPMNSQIINEEGMQRHFSGGEWGERLDMMSRRKTAVLAPENFENM
WTKGRNYRKKEGENRLIEQVPQNSSASKYVTSDHSKRASNSKKDGVTKLDAPLAHNAQSV
GTEQSTVENPLHHTDQNMSNYPLFSSHKDGIRSLMRVDEIESGSTSSYTSEEEDANSVTG
LDSPGTKVWDGKTNRNLAVSHIHHPLENPDGHREKKTGRGLAHYQRLSRHQSGSKRSRPS
TQKVHVWQEIERKSFLSGDGQDVLSLKGHTKADDFSDDSEVESLDRVYSGATACSSATSV
SIPENHTSNVNSFKHSLMVDSIYKLRCEVLGANIVKSGSKTFAVYSISVTDVNNNSWSIK
RRFRHFEELHRRLKEYPEYSLHLPPKHFLSTGLDVPVIQERCKLLDIYLKKLLLLPTISG
SIEVWDFLSVDSQTYVFSNSFSIIETLSVDLDDKPSEKSKRVSNFIGPAINYLSARKEQL
SAECKESILQTKHNLGAVGARMISKDTPRSPVKSIKESGRSLKDPGSDSDMQKNVSSARN
LEENVRVGDSLEEMSASIHDTASDHMLPTEWVPANLTVPILDLVDVIFQLQDGGWIRRQA
FWVAKQILQLGMGDALDDWLIEKIQLLRRGSVVASGIKRVEQILWPDGIFITKHPKRRPP
PQQPTEVSSPKLISPHGQQPMEVSSPRLNDEQQQQDAVRRAKFVYELMIDNAPAAVVGLV
GRKEYEQRAKDLYFFLQSSVCTKQLAFDLLELLLLTAFPELDSVFRQLRVEKHKFGEFKP
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcgagaatgagcacgcaaaggcaggtgattgtacgggacttagtggaggaagcc
aagaagaggattgttatgttggttatttgtgttgttggattatcttatctcatgtcctta
acgagtgcctcagtttgggtcaacttgcctgctgctgcttccttgatcattctccttcgc
tacttttccctggattatgaaatgcgcaagaaagctgctgtatataacaacaaaccagcc
tccacaacatcaagcacactgtcacaaaacaaatctcttgaatttaccagggttgttgaa
aagtccgattggagaaggaaagtgaattcacctgttgttgaggatgcaatagatcatttc
actagacgtctagtctctgagtgggtgacagatctatggtactctcgcttaacccctgat
aaagaaggtccggaagaactggtgcagataatgaatggtgttcttggggaattttcaagt
cgcatgagaaatgtaaatcttattgatctactgacaagggattttattaatctcatctgc
acccacttggagctttttcgtgccattcaagcaaagatggaaaagcgacagtctagtgtg
cttaccattgaacagcgagacaaggaactaagacatgtcctggctgctgagaacaaattg
caccctgctttattttctactgaagctgagcacaaggttttgcagcatctgatggatggt
ctcatttcttttacattcaagccagcagatctgcagtgctctttcttccgttatgttgtt
agggaacttcttgcttgtgcggtaatgcgaccagtgttaaacttagctagcccaaggttc
ataaacgaaaggattgaaagtgttgtcatttctaaggctaatcaaagagttgctgcagca
caagagacatctcatttcaaaccaaatgggtcttcaaggatctcatccaatcatttttcg
aggtttttagatcctactgatactggggttgagcttgtgcagttaaaaaccgaccaatgc
agaggtggaccagatgcccctgaaaaagataaagtgaatggaagccatatctcaaaagat
ccattactttacattgatacccaatcttcccgcacatggagctcgctgcccatgaattcc
cagattattaatgaagaaggaatgcaacgacatttttcaggaggagaatggggtgagagg
ttggatatgatgtctcgcagaaagactgcagtccttgctccagaaaattttgaaaacatg
tggacaaaagggagaaactatagaaagaaagaaggggaaaatcgattgatagagcaagtc
cctcagaattcttcagcgagtaagtatgttacatcagatcattcaaagagggcatctaat
tccaagaaggatggtgtaaccaaactcgatgcccctctggcccacaacgcccagtctgtg
ggtactgagcaatctacagtagaaaaccctctacatcatacagatcagaatatgtcaaac
tatccactatttagttcacacaaagatggcatacggagcctcatgcgtgtagatgagatt
gaatcaggtagcactagctcttatacttctgaagaggaagatgcgaacagtgtaaccgga
cttgattctccaggaactaaagtctgggatggtaaaactaacagaaacctggctgtttcc
cacattcatcatccacttgaaaatcctgatggccacagggagaagaagactggcagaggg
cttgctcactatcaaagattatctagacaccagtctggcagtaaaaggtcaaggccaagc
actcagaaggtacatgtttggcaagagattgagagaaaaagcttcttgtctggagatgga
caggatgtacttagtttaaaaggacatactaaagctgatgatttcagtgacgattctgag
gttgaaagtttagatagagtttacagtggagcaactgcgtgttcatctgcaacatctgtt
tctattcctgaaaaccacacttcaaatgttaattcttttaaacattcattaatggtggac
tcaatttataagttgagatgcgaggttttgggtgcaaatattgttaagagtggctctaaa
acatttgctgtttattccatatctgttacagatgtaaataataatagttggtcgatcaaa
agaaggtttcgacatttcgaggagttacatagacgtctcaaagagtatccggaatatagt
cttcatttgccacctaagcattttctctctacaggcttagacgtgcctgtcatacaagag
cggtgtaaattgcttgatatatatctaaagaagctcttgctacttccaacaatttcagga
tccattgaagtctgggactttcttagtgttgattctcagacgtatgtgttctctaattcg
ttttctatcatcgaaacattatcagttgacctggatgacaagccctctgaaaagagtaaa
agggtttcaaattttattggccctgcaatcaattacttatccgctaggaaggagcaattg
agtgcagagtgcaaggaatctatattgcagacaaagcataatcttggggcagttggggca
cgaatgatttcaaaagacacgcctcgttctccggtgaagtctattaaagaatctggaaga
tcattgaaggatccaggaagtgattcagatatgcaaaagaatgtatcatctgctagaaat
ttagaggagaatgtaagagtgggtgatagcttagaagagatgtctgcgtctattcacgat
actgctagtgatcacatgctccctacagagtgggtgccagcaaatttgactgttcctata
cttgacctggtagatgtcattttccagctacaagatggtggatggatcaggaggcaggct
ttttgggtggccaaacagatactacaactaggaatgggcgatgctttagatgattggttg
atagagaaaatccagcttctgcgtaggggttcagttgttgcatcagggatcaagcgggtt
gagcagatactttggcctgatggaatattcatcaccaaacatccaaagagacggccacca
ccccagcaacccacggaagtgtcttctcctaaattgatttcccctcatggccagcaaccc
atggaagtctcttcacctagattgaatgatgagcagcaacaacaggatgcagttcgacga
gctaaatttgtatatgagctgatgattgacaacgcaccagctgctgttgtgggccttgtt
ggtcgaaaggagtatgaacaacgtgcaaaagatctctacttctttcttcagtcatcagtt
tgtacgaagcaactggcttttgatctccttgagctgctgcttttgactgcatttccagaa
ctggattctgttttcaggcagttgcgtgtagagaagcataaatttggcgagtttaaaccc
aattag
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