Populus trichocarpa (black cottonwood): 18096919
Help
Entry
18096919 CDS
T01077
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18096919
03015 mRNA surveillance pathway
18096919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18096919
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
18096919
5.6.2.5 RNA 5'-3' helicase
18096919
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
18096919
mRNA cycle factors
Common to processing body (P body) and stress granule
18096919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
Helicase_RecD
UvrD-helicase
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
AAA_25
Ribosomal_S13_N
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
18096919
NCBI-ProteinID:
XP_024452262
LinkDB
All DBs
Position
3:complement(11307728..11320904)
Genome browser
AA seq
1269 aa
AA seq
DB search
MDNQDNNLYETASQPDTATDAYTFLEFNTQGESDFDYPEFRSPVAWPTPSDSLGATSSAV
DPTSSDHRTAASTPDLHSDSLAASPVASKSAARGGGANSGTQGVVEGLVASIGGLNFEET
GDDDGYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMN
WDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKP
GVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVA
YFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
VNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQTVRNALPRRFG
APGLPELNASQVLAVKNVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKD
EQGELSSSDEKKYKALKRATEREISQSADVICCTCGGAGDPRLSNFRFRQVLIDESTQAT
EPECLIPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQY
RMHPCLSEFPSNNFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPNDSFGSV
ASASSNADRRNSRSRGSYLSPGPPNGTHKPGVAGFPMPRVPIPPFHDGPPSQPYAIPTRG
AVHGPIGAVPQVPPPGSRGFSAGRGNAGAPIGSHLSHQQGNQQGIGNIGSFNFPALENPN
SQPSVGGPLSQPGYVNNIPVQGSSQTFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADFS
TQASQGGYAVDYVTQGAQGGFPGNFLNQNSQPGYSRFGSGNDFMSQDYMAHGSQGLFTQV
GYNDPSQDDASQSHFGIANPNQLQSQGLMNSLYSQPFGHYNTQQLNLQAPQQQPQQGQGT
QNQKIHYNG
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggataaccaagacaataacctctacgaaacggcctcgcagccagacacagcaacagac
gcctacaccttccttgaattcaacacacaaggcgaatccgattttgactaccccgaattc
cgctctccggtggcctggcccactccttctgactctctcggcgccacctcctccgccgta
gaccctacctcgtccgaccaccgtaccgccgcttccacccccgatctccactctgattct
cttgctgcgtctcctgtcgcgtcaaaatctgctgcgcgtggcggtggagcgaacagtggg
acccagggggtggtggaggggttagtagcgagcataggagggttgaattttgaagagacg
ggagatgatgacgggtatgagtttgggaaaggggattttacggagcacgcttgcaggtac
tgtggggtttcgaatcctgcgtgtgttgtgaggtgtaatgtgccgtcatgtaggaagtgg
ttctgtaattcaagagggaatacatctggttcgcatattgttaatcatctggttcgagca
aagcataaagaagtctgtctccataaagacagccctcttggagaaacaatacttgagtgc
tacaactgtggttgccgaaatgtgtttcttcttggatttatatcggccaagacagagagt
gttgttgtcctcctctgcagggagccttgcttgaatgttaatgcgctgaaggacatgaat
tgggacctgagccagtggtgcccccttattgatgataggtgttttctacagtggcttgtg
aagatcccatccgaacaggagcagttgagggctcgccaaattagtgctcaacaaataaat
aaagtagaagaactttggaaaactaatcctgatgccacccttgaagatcttgagaagcct
ggtgttgatgatgagccacagcctgtggcattgaagtatgaagatgcatatcagtaccaa
aatgtatttgctccacttattaagcttgaagctgactatgataaaatgatgaaagagtct
caaagcaaggataatgtcactattcgatgggatattggccttaacaagaagcgtgttgca
tattttgtatttccaaaggaggacaatgagttgcgtcttgtacctggtgatgagttacga
ctgcgctattctggagatgcagctcatccagcatggcaatcagttgggcatgtgatcaag
ctaactgcacaagaggaggttgcacttgagcttcgtgctagtcagggagttcctgttgac
gtgaaccatggttttagtgttgattttgtttggaagagcacgagctttgatcggatgcag
ggagcaatgaagacttttgcagtggatgaaaccagtgtcagtgggtatatatatcaccac
ttgttgggccatgaggttgagaatcaaacagttcgtaatgcattgcctcgccgttttggg
gcacctggtcttccagagctgaatgcatcccaagttcttgctgtgaagaatgtcctccaa
aagcccattagtttgattcaaggtccacctggcacaggaaaaactgtcacttctgcagcc
attgtatatcacatggccaaacagggccaagggcaggttttggtgtgtgccccaagtaat
gtggctgtagatcagctagctgagaagataagtgccactggcttaaaggtggttaggcta
tgtgcaaaatcaagggaagctgttagttctcctgttgagcatctcacccttcactatcag
gtcagacatctggacacttcagagaaaagtgaacttcacaagttgcaacaattgaaagat
gaacaaggggaactgtccagcagtgatgagaaaaaatacaaagcactgaaacgagcaact
gaaagggaaatttctcaaagcgctgatgtcatctgttgcacttgtggtggtgctggagat
cctcggttgtcaaattttaggtttcgccaggtactaattgatgagtcaactcaagcgaca
gaaccagagtgtcttattcctttggtacttggggcgaagcaggttgtttttgttggtgac
cattgccagcttggtcctgtcattatgtgcaagaaagctgctcgtgctgggttagcccag
tctctctttgaacgccttgttttacttggtgtgaaaccaattagattgcaggttcaatat
cgcatgcacccgtgtctttctgaatttccatctaacaacttttatgaaggcactctacaa
aatggagtgactgtcaatgagagacaatcgtcaggcattgattttccttggcctgtgcct
aatcgtcctatgttcttctatgtccagatgggacaagaagagataagtgccagtggaaca
tcctatctaaatcgtacggaggctgcaaatgttgaaaaaattgtaactacatttttgagg
agcggtgtagtcccgagccagattggagtgataacaccttatgaggggcagagagcatat
attgtgaactatatgtcaagaaatggtgccctcagacagcaactatacaaggaaattgag
gttgcaagtgttgattcatttcaaggaagagaaaaagattacattattttgtcttgtgtt
aggagcaatgaacatcagggcattggatttcttaatgatcctcggaggctgaatgttgct
ctaactcgtgcacgatatggtattgtcatcctgggaaaccctaaagttctaagcaagcag
cctttgtggaatagcttattaactcactacaaggaacacgagtgtttggttgaaggacct
ttgaataacttaaagcagagtatggttcaatttcaaaagcccaaaaagatttataacgat
aggagattgttttttggtggtggacctggaattgtcccaaatgatagttttgggtctgtt
gcctcagctagctcaaatgctgatagaagaaactcccgttccaggggttcttatttgtca
ccaggcccaccgaatggtacccataagcctggtgttgctgggtttccaatgcctcgggtc
cccattccaccatttcatgatggtccaccttctcaaccatatgctattcctactcgtgga
gctgtgcatgggcccatcggagctgttcctcaagtccctccacctggaagtcgaggtttt
agtgctgggcgtggcaatgctggtgcacctattggaagtcatctctctcaccagcaaggc
aaccagcaaggcattgggaatattggatctttcaactttcctgccctagagaatccaaat
agccagccatctgtgggtggtccactatctcagcctggatatgttaataatattccagtt
caagggtcgagccaaacctttcgtgatggattttccatggggggtatgtcccaggagttc
ttgggcgatgacttcaaaagccagggatcacatgttccttacaatgttgctgatttctca
actcaggcatctcaaggtggatatgctgtcgattatgttacacaaggggcacaaggtggg
tttccaggcaacttcttgaatcagaattctcaacctggatattctcgttttggttctgga
aatgatttcatgtctcaggattacatggctcatggatcacaaggtctattcactcaggtt
ggctataatgatccctcacaagatgatgcatcacaaagccactttggcatagccaaccct
aaccagcttcaatcacagggcttgatgaattctctttactctcagccctttggccactac
aacactcagcagctgaacttgcaggctccacaacagcagccgcagcagggtcagggtacc
caaaaccagaaaatccattacaatggttga
DBGET
integrated database retrieval system
