Populus trichocarpa (black cottonwood): 18096996
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Entry
18096996 CDS
T01077
Name
(RefSeq) DNA (cytosine-5)-methyltransferase CMT2 isoform X1
KO
K00558
DNA (cytosine-5)-methyltransferase 1 [EC:
2.1.1.37
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00270
Cysteine and methionine metabolism
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09105 Amino acid metabolism
00270 Cysteine and methionine metabolism
18096996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
18096996
03032 DNA replication proteins [BR:
pop03032
]
18096996
03036 Chromosome and associated proteins [BR:
pop03036
]
18096996
09183 Protein families: signaling and cellular processes
02048 Prokaryotic defense system [BR:
pop02048
]
18096996
Enzymes [BR:
pop01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.37 DNA (cytosine-5-)-methyltransferase
18096996
Transcription factors [BR:
pop03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
18096996
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Termination Factors
DNA methylation enzymes
18096996
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
18096996
Prokaryotic defense system [BR:
pop02048
]
Restriction and modification system (R-M system)
Type II R-M system
DNA methyltransferases
18096996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_methylase
BAH
Chromo
Motif
Other DBs
NCBI-GeneID:
18096996
NCBI-ProteinID:
XP_024453765
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All DBs
Position
3:12514288..12528727
Genome browser
AA seq
1262 aa
AA seq
DB search
MKSSSSPTDSRPKLTPLQVYESTSTSRRSPRLAPPNNNVPSKTPKSNKPKTTHISLRRSP
RLEPTPASPQSVSRKKHSRNVSKTKCSARNVSVDRKIPSRSSRVGNSRMQNVAANRTVLL
DSSALRRSPRLSSADMEIVVSERNASVVVADTARLRRSPRLANGYAEVAVSKVRTFLKRK
RVSDEMSRSPRNQNGRLDVQFALVQSEKCSRFIVNEENERNCLKVECSSKDLSKGSPVAC
SSANAKLGCCEKRGCQSVLLTISDSEVGDSGEFEAKPLLLPWHGDNESQTGMVKCDDGSS
VFEEEPLRMSPSFDFANENAVINESPIKSCKWSSALDGDGNFEVISCSSGIFDSNDACPS
KRVKICEENSVSGMSDEKLLRRSPRTNSIVVTENGENKSGKKQSPKTNSGKELSLEKASS
GKKQKEHRGNCSLIGDPVAHDEAQERWHWRYEMKSKRTKHPRLALDDDDEDKVVWNVECH
YTQANIEGRIINLGDCVYVKGEGAKNHIGSILEFFKTTDREDYFRVQWFYRAEDTVMKEA
ADFHDNKRLFYSTVMNDNPIDCIISKVTVVQISPRVHLKFHSTPASDFYFDMEYCVDYST
FRTLLTGKNLNSTPGTELLFESCCNCMSNGGREGTVSSFNGRHEILVRNQYCSLRGHELS
PLPFCDSRSATPSDISMENMSTCGSYKAKLTLLDLFSGCGGMSTGLCLGAKVSCVDLVTR
WALDSDESACQSLKLNHPETHVRNEAAEDFLELLKEWQKLCKRYAVNDVGRTHKSRSMAS
SMSKQNKNSSNDDDIASGEYEVARLVDICYGKTDKRGKRGLKFKVHWKGYSTSEDSWEPI
EGLSNCEHSIRDFVREGFKSKILPLPGDADVICGGPPCQGISGYNRYRNVDSPLADERNI
QIVVFMDIVQFLKPKYVLMENVVDILRFDKASFARYALSRLVHMKYQARLGTVAAGCYGL
PQFRLRVFLWGAHPKEKLPQFPLPSHDVIVRYWPPPEFERNTVAYDEDQPRDDLEKATVL
RDAISDLPDVTSHETREEMAYDKPPETDFQQFIRSTRNEMTGSELSGTRMINLLYDHRPY
SLTEEDFARVCQIPKKKGANFRDLPGVVVGADNVARRDPTEEQMLLPSGKPLVPDFALNF
EGGKSRRPYARLWWDETVSTVVTFPDLHSQAVMHPEQDRVLTIRECARLQGFPDYYRFCG
TVKQRYRQIGNAVAVPVGRALGFTLGMAFQKLSGDDPLMTLPPKFSHSTNLQLAKSLFQK
AE
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgtcatcatcaccaacggattcaagaccaaaattaacacctttgcaggtgtac
gaatccacttctacctcaagaagatctccaagattagctccaccaaacaacaatgtacct
tcaaaaacccccaaatctaacaaacccaaaacaactcacatttccctcagacgatctccg
aggcttgaacccacacctgcttctccccaaagcgtttcgaggaaaaagcacagccgaaac
gtttctaaaacgaaatgctctgctcgaaacgtttctgttgaccgcaaaatcccgtcgagg
tcctcaagggtggggaattcgcgcatgcaaaatgttgccgccaacagaacagttttgttg
gattcttcagctttgaggaggtcgccgaggctgtcaagtgcggacatggagattgttgtt
agtgaacgaaacgcttcagttgttgtggcggatacagcgcgcttgaggaggtccccgagg
ctggcaaatgggtacgcggaggttgcggtcagtaaagtgaggactttcttaaagagaaag
agagtgtctgacgagatgtcaaggtcaccaagaaatcaaaacggccgattggacgtacag
tttgccttagttcagagtgaaaaatgctcgcgcttcatagtaaacgaagagaatgaaaga
aattgtttgaaagtagaatgctcgagtaaggacttatcaaaggggtcacctgtagcatgc
agttcagcaaatgctaaactgggatgctgtgaaaagcgtggttgtcagtctgttttgttg
acaatttctgactctgaagtaggggattcgggagagtttgaagccaaaccgctattgctt
ccatggcatggagataatgagagtcaaactgggatggtaaaatgtgatgatggctcaagt
gtgtttgaggaggagccgttgaggatgtctccaagttttgattttgcaaatgaaaatgct
gttatcaacgagtctcccataaaatcttgtaaatggtcctcggcattggatggggatggg
aattttgaagtgatatcttgttccagtgggatttttgattcgaacgatgcatgcccttct
aagagggttaaaatttgtgaagaaaattctgtttcaggaatgtcagatgagaagctcttg
agacggtctcccaggacaaactcaattgttgtgactgaaaatggggaaaacaagtcaggt
aagaagcaatctccaaagacgaattctggtaaagaactgtctttggagaaggcttcttca
gggaagaagcagaaggaacacagaggtaattgttccctgattggagatcctgtcgcccat
gatgaagctcaagaaaggtggcattggcgatatgaaatgaagagtaagagaaccaagcat
ccaagactcgctttagatgatgatgatgaagataaggttgtttggaatgttgaatgccat
tacactcaggctaatattgaaggtcgcatcattaatcttggagattgtgtctatgtaaag
ggtgaaggagcaaaaaatcatattggtagtatcttagagtttttcaagacaacagacagg
gaagattattttagggtccaatggttttacagagctgaggatacggtgatgaaagaagca
gctgattttcatgacaataagcggttattttattccacagtgatgaatgataatccaata
gattgcattatttctaaagtcactgttgtacagatatcacctagggtacatttaaaattt
cattcaacaccagcgtctgacttctactttgacatggaatactgtgtggattattcaaca
tttcgaactttgctgactggtaagaatttaaattctactcctggtaccgagttgctgttt
gagtcttgctgcaattgcatgtcaaatggaggaagggaaggaacagtttcatcattcaat
ggaaggcatgagatattggtcaggaaccaatattgttcattaaggggacatgagttatca
ccactgcctttctgtgattctcgatctgcaactcccagtgatatttcaatggaaaacatg
tccacttgtggaagttacaaagcaaagttgacactactagatcttttctctggctgtggt
ggaatgtcaactggattatgcctgggtgccaaagtttcttgtgtcgatcttgtgacgaga
tgggcgctagacagtgatgagtctgcatgtcaaagcttgaagttaaatcatccggagaca
catgttaggaatgaagctgccgaggattttcttgaactattgaaggaatggcaaaagcta
tgcaaacgttatgcggtcaatgatgtaggaaggacacataagtcacggtcaatggcatca
agtatgtcaaaacaaaataaaaattcttcaaatgatgatgatattgcttctggtgaatat
gaagtcgctaggcttgttgacatttgttatgggaagaccgataagagaggaaagcgtggg
ctgaaatttaaggtgcactggaagggttatagtaccagtgaagattcatgggagccaatt
gaaggcttaagtaactgtgaacattctatacgggattttgtaagagaggggttcaaatcc
aagatcttgccacttcctggtgatgctgatgtgatttgtggaggtcctccatgccaaggg
attagtggctataatcgctatagaaatgttgattctccacttgctgatgaaagaaatatt
cagattgtagtcttcatggacatagtgcagttcttaaaacctaaatatgtgctgatggaa
aatgtagttgacatccttagatttgacaaggcttcgtttgctagatatgctttaagccga
ttggtgcatatgaaataccaagcaaggcttggcactgttgcagctggttgttatggtctt
ccacaatttcggctgcgtgttttcttgtggggagctcatcccaaggagaaactgcctcaa
tttccacttccttctcatgatgttattgtcagatattggcctccacctgagtttgagcgg
aacactgttgcctatgatgaagatcaacctcgtgatgatctagaaaaagccacagttctt
cgtgatgccatttcagatcttccagatgtcacaagccatgaaacccgtgaggaaatggca
tacgacaagcctccagaaactgactttcaacaattcataaggtcaacaagaaacgagatg
actggttctgagctcagtggaacaagaatgatcaatttgctatatgaccatcgtccttat
tcattaactgaagaagattttgctcgagtttgccaaattcctaaaaaaaagggagcaaat
ttcagggacctacctggtgtggttgtaggagctgacaatgttgcccggcgggatccaacg
gaagagcaaatgttgttgccatctggaaagcccctggtacctgattttgccttaaatttc
gaaggaggaaagtctagaaggccatatgcgagattatggtgggatgaaacagtgtcgact
gttgttacttttccggatcttcacagccaggcggtgatgcatccagagcaagatcgagtt
ctcaccatacgagaatgtgctaggctgcaaggttttcctgattattatagattctgcggg
acagttaaacaaaggtatcgtcaaattggaaatgcagttgcagttcctgtaggtcgtgcc
ttgggattcacgttggggatggcatttcaaaaactaagtggggatgatccgctaatgaca
ttacctcccaagttctctcactcaactaaccttcaattagctaaatcactgtttcagaag
gctgaataa
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integrated database retrieval system
