KEGG   Populus trichocarpa (black cottonwood): 18097038
Entry
18097038          CDS       T01077                                 
Name
(RefSeq) lysine-specific demethylase JMJ17
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pop01009]
    18097038
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pop03036]
    18097038
Enzymes [BR:pop01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     18097038
Protein phosphatases and associated proteins [BR:pop01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     18097038
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    18097038
SSDB
Motif
Pfam: PLU-1 JmjC JmjN zf-C5HC2 ARID PHD KDM5_C-hel PHD_UBR7-like PHDvar_NSD DUF7971 HisKA DUF2259 PHD_ash2p_like
Other DBs
NCBI-GeneID: 18097038
NCBI-ProteinID: XP_052307626
LinkDB
Position
3:14599241..14615484
AA seq 1872 aa
MGKGKPRAVEKGVLGQNLSLFSSSSSASSSSGSLHVPSAPVYYPNEEEFKDPLEYIYKIR
PEAEPYGICKIVPPNNWKPPFALNLENFSFPTKTQAIHQLQVRPASCDSKTFELEYNRFL
EEHCGKKLKRRVIFEGDELDLCKLFNGVKRFGGYDKVVKEKKWGEVSRFVRSGRKITECA
KHVLCQLYQEHLYDYEEYYNRLNKGVARGCKRGVRKSKKSDDRMEFSRSKRRRKNSDGEK
VKVCNKVEEEEEHDQICEQCRSGLHGEVMLLCDRCNKGWHIYCLSPPLKQVPPGNWYCFE
CLNSDKDTFGFVPGKRFTVEAFRRLADRAKRRWFGSGSTSRVQMEKKFWEIVEGSAGDVE
VMYGSDLDTSVYGSGFPRVNDQRPESVEANLWDEYCGSPWNLNNLPKLKGSMLQAVHHNI
TGVMVPWLYVGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSEAGAFEKVMRSSLP
DLFDAQPDLLFQLVTMLNPSVLQDNRVPVYTVLQEPGNFVITFPRSYHGGFNFGLNCAEA
VNFAPADWLPYGGFGAELYKNYHKTAVLSHEELLCVVAKGDFDSKASPHIKKEMLRIYTE
EKSWRERIWRSGIIKSSPMPLRKCPEYVGTEEDPACIICKQYLYLSAVVCHCRPSAFVCL
EHWERICECKSRRRRLLYRHTLAELSDLVLASDSDRFEERSPSNDLRRQISCSNELNVLT
KKVKGGHVSLAELAEQWLSRAKKFFQHPYLGDACATLLKEAEQFLWAGSEMDPVRDMVKS
LNAAQMWAGGIRDCLFKVQNWSSGHSCDLERVPLEYIAELLNNDPVPCNEPGHLMLKERA
DEAWRLAQEIDSALSSCSEISVLESLYSRFSDLPIYIKESKKLSKKLSSAKIWIDSAKKC
ISETQSAAVDIDILYKLKSEMSELQIQLPETELLLDLVRKAESCQSQCKEILKAPFSLKN
VEVLLQEFKNFTVNIPELMLLKQCHINAVSWISRCNDVLVNLHEREDQDKVVNELNCLLK
DAASLRIQVDELPLVELELKKACCRVKVLKARDMKMPLDFIQELMMEAFVLQIEKEKLFV
DLSGVIAAVRCWEERATKLLAQEAQMLDFEDIIRTSADIPVLLPLLDDIKDAVAMAKSWL
ENSAPFLVSSSSMVSGSVSSLKLEVLKELVSHSKLLKISLDERRMLEMVLKNCDEWQQDA
NSALQDARCILSTDDIDDGKNGCLFGKVEHLAAKMESITKAGLSLNFDFAEIPKLQNACS
MLRWCSRALSFCTCAPSLEDVESLMEAAENLSVIGVSGTLWSALIDGVKWLRKALGVISL
PGNFERFKLSDAEVVLAESQSIQISFPLMVNQLVNAIHKHKLWLEQAERFFSLNSEERSW
SLILELKELGKASAFSCSELDLVLYEVEKVEKWKQQFVEIIGRFVDDRNSLSDALQKVKQ
SLDISLNIYGKSWSAKARILCMCYTGYNEEIFFSLVQCARTATICGALIQHKSIQIMLKF
LFAIIANFLMMGQYPKMEVVPWYAFIKYLWTFSYKESGKNGEKQLELRMLIELLSDSENF
PTRIEEKDLLQQIVDQAHECKKCLREILDFALSYLDKDLTVVCEKLTIALKATEVAGVCD
NQDKCDLELASARNSWRVRVKRLLEDAQKPTMQHIQRHMKEGLAMSIPPEDYIWQKLAEL
KDIGLQWADHAKKVATDSGALGLDKVFELISEGENLPIYLEKELKLLRARSMLYCICRKP
FDSRVKVACKLCGEWYHIDCIKLLTPPKIYFCAACEPQTEGLSVSLLADHERSTSAKSVE
PKTPSPRHTKSRKKPGETESNVMQKMLAFENHSNVFIHSSGIDQLGWQNRKPLRRAAKKR
TELKILSQFFHR
NT seq 5619 nt   +upstreamnt  +downstreamnt
atggggaaaggaaaacccagggctgtagaaaaaggagttttagggcaaaatttgagttta
ttttcgtcgtcttcatcggcttcttcgtcatccgggtcattgcatgtgccatctgcacct
gtttattaccctaatgaagaggaatttaaggatccattagagtatatttacaaaattaga
ccggaagcggagccttatgggatttgtaaaattgttccaccaaataattggaaaccgcca
tttgcattgaatttggagaattttagttttcctacgaagactcaggctattcatcagttg
caagtgaggccggcgtcttgtgattccaagacttttgagttggagtataataggttcttg
gaggaacattgtgggaagaagttgaaaaggagggtgatttttgaaggggacgagttggat
ttgtgtaaattgtttaatggagtgaagaggttcggtggctatgataaggtcgtgaaggag
aagaagtggggtgaggtttcgaggtttgttaggtccgggaggaagattacagagtgtgcg
aagcatgttttgtgtcagttgtatcaagagcatttgtatgattatgaggagtactataat
cgattgaataagggggttgctaggggttgtaaaaggggagtgcgaaagtctaagaagagt
gatgataggatggagttttcacgttcaaaaaggaggcggaagaacagtgatggtgagaaa
gtgaaggtttgtaataaggtagaggaggaagaagagcatgatcagatatgcgagcaatgc
aggagtggtttgcatggggaggtgatgcttttgtgcgatagatgtaacaaggggtggcat
atttattgtctctcaccgccattaaagcaagttccgccagggaattggtattgctttgag
tgtttgaattctgacaaggatacttttggttttgtccctggtaagcgcttcacagtggaa
gcttttaggcgtctagctgatcgggccaagaggagatggtttggctcaggatctacttct
cgagtgcagatggagaaaaagttctgggaaattgtggagggatcagctggtgacgttgaa
gttatgtatggtagtgacttggatacttctgtttatgggagtggcttcccacgtgtaaat
gatcagagaccagaatcagttgaggctaacttatgggatgaatattgtggcagtccatgg
aacctcaataatttgcccaagttgaaaggttcaatgctccaagctgttcatcataacatt
actggtgttatggtgccctggctatatgttggcatgcttttctcatctttttgctggcat
tttgaagaccactgtttttactcaatgaattatctacactggggagagccaaaatgttgg
tacagtgttccgggtagtgaagctggtgcttttgagaaggtgatgcgcagtagtcttcct
gatctctttgatgcacaaccggatttactcttccagcttgtaaccatgctgaacccatct
gtcttgcaagataatcgggttccagtctatactgtactgcaggagcctggaaactttgtc
atcacttttcccaggtcttaccatggaggtttcaactttggtttgaattgtgcagaagct
gtgaattttgctccggctgactggctaccttacggtggatttggagcagagctgtataag
aattatcataagactgctgttttatctcacgaggagcttctttgtgtggtggctaagggt
gattttgatagcaaagcatcgcctcatataaagaaagaaatgcttaggatatacaccgaa
gagaagtcctggagggagaggatttggagaagtggcatcatcaaatcatcccctatgcct
ctgcggaaatgtcctgaatatgttggtactgaggaggatcctgcatgcattatatgcaaa
caatatctgtatctttctgcagttgtttgccattgtaggccatccgcatttgtctgtctg
gagcattgggagcgtatctgtgaatgtaaatccagaagacgtcgtcttctatatcgtcat
acccttgcagaattgtctgatttggtgctcgcatcagatagcgatagatttgaggagaga
tcaccaagtaatgacttacgaaggcaaatctcatgttccaatgagctgaatgtgttaacg
aagaaggtcaagggggggcatgtcagcctggctgaacttgctgaacaatggctttcgcgt
gccaaaaagttttttcagcatccatatttgggtgatgcatgtgctaccctgttgaaggaa
gctgagcaatttctttgggctggttctgagatggatcctgtacgagacatggtgaagagc
ttgaatgcagctcagatgtgggcaggaggcataagagattgtctttttaaagttcaaaac
tggtcatctggtcacagctgtgatttggagagagtgcctttggaatacattgctgagttg
ctgaataatgatcccgtgccatgtaatgagccagggcatctcatgttgaaggagcgtgca
gatgaggcatggcgtttggctcaggaaattgattctgctctgtcatcatgctcagaaata
tctgtgctggaatcactgtactcgagatttagtgacttgccaatatatattaaagaaagc
aagaagctgtcgaaaaaactttcatcagcaaagatctggatagacagtgcaaagaaatgc
atatcagagacacaaagcgctgcagttgacattgatattctctacaagctgaagtcagag
atgtcggagcttcaaattcaacttccagaaacagaattgcttttggatctagtaaggaaa
gctgaatcatgtcagtctcagtgcaaggaaatcttgaaagctccatttagtttaaagaat
gttgaagtgttgcttcaagaattcaagaattttactgttaacataccggagttgatgctt
ctgaagcaatgccacatcaatgctgtttcatggatttctcgctgtaatgatgttttggtg
aatcttcatgaacgggaagatcaagataaagtagttaatgaattaaattgcctattaaaa
gatgcagcatctttgagaattcaagttgatgagttgcctctagttgagttagagttgaag
aaggcttgttgcagagtaaaagttctgaaagctcgtgatatgaaaatgcctttggacttc
attcaggaactgatgatggaggcttttgtgctacagattgaaaaagagaaactgtttgtt
gatttgtctggagtaattgcagctgtgaggtgttgggaggaaagagccacaaaacttctt
gcacaggaagctcaaatgttggattttgaggatattataaggacttcagcagatatacct
gtgcttctacccttgctagatgatattaaagatgctgtagcaatggctaagtcctggtta
gagaattctgcgccatttttggtttcttctagttccatggtatctggctctgtttcttca
ctcaaactcgaggtcctaaaggagttggtttcacactcgaagttactaaaaatatctttg
gatgaacgaagaatgcttgaaatggttctgaagaactgtgatgaatggcagcaggatgcc
aactctgcattgcaggatgctaggtgcattctgagtacagatgatattgatgatggaaag
aacggttgtctttttggaaaagttgaacatttagctgctaaaatggaatccatcactaaa
gctggtttatctctgaattttgactttgctgagattccaaaactccagaatgcatgttca
atgctgcgatggtgctctagagctctttctttctgcacctgtgctccttctttggaggat
gttgagagtttgatggaggctgcagaaaacctttctgttatcggtgtctctggtacccta
tggagtgcattaattgatggggtcaaatggcttaggaaagccttgggagtaatttctttg
cctggcaattttgaaagattcaagctgagtgatgccgaagtagttcttgctgaatctcag
agtatacaaatctcctttcctttgatggtcaatcaacttgtaaatgccattcataaacac
aagttgtggctagaacaagctgaacgattttttagtctaaactctgaggaaagatcctgg
tctctaatattagagcttaaggaactggggaaggcttcagcattttcttgttcagagcta
gatctggttctatatgaagttgaaaaggttgaaaagtggaagcaacaatttgtggagatt
attggaagatttgtagatgataggaattcgttgtctgatgcattgcagaaggtcaagcag
tctctggatatatctctgaacatctatggcaaatcatggagcgctaaagcaagaatacta
tgcatgtgctatactggttacaacgaagaaatttttttctctcttgttcaatgtgcaagg
accgctaccatttgcggtgccttgattcagcacaagtcaatccaaataatgctgaagttt
ttatttgccattattgccaattttttgatgatgggtcaatatcccaaaatggaggtggtc
ccctggtatgcatttatcaaatatctttggactttctcttataaagaatctggtaaaaat
ggagagaagcagcttgaattaagaatgctgattgaacttctatctgattctgagaatttc
cctacaaggattgaagaaaaggatttattacaacagatcgtggaccaagctcatgaatgc
aaaaaatgcttgagagaaatattggattttgcattatcttatttggacaaggatctcact
gttgtctgtgaaaaactaaccattgctctgaaggccacggaagtggcaggtgtttgtgat
aatcaagataaatgtgaccttgaactggcatcagctagaaattcttggagagtgagagtc
aagagactattggaggatgcacagaagcctacgatgcaacatattcagcggcacatgaaa
gagggactagctatgagcatacctccagaagattacatatggcagaaacttgctgaactg
aaggacattggcttgcagtgggcagatcacgcaaagaaggttgcaacagattctggagct
cttggcctggataaggtttttgaacttatttcagagggtgaaaatttgcctatatactta
gagaaggaactgaagttattaagagctcgaagcatgctgtactgcatttgccgaaaacca
tttgacagtagagtaaaggtagcgtgtaagttgtgtggtgagtggtaccatattgattgt
atcaagctactcaccccaccaaagatctacttctgtgctgcatgtgagcctcaaactgaa
gggttgtctgtgtcactactggcagatcatgagagatcaacgagtgccaaatctgtagag
cccaaaacaccttcacctcggcacacaaaatcaagaaagaagccaggtgaaacagagtcc
aatgtgatgcaaaaaatgcttgcatttgaaaaccatagtaatgtatttatccattctagt
gggattgatcaattggggtggcagaaccggaagcctcttagaagggcagctaaaaagcga
acagagctcaaaatcctgtcccaattttttcataggtaa

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