Populus trichocarpa (black cottonwood): 18097235
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Entry
18097235 CDS
T01077
Name
(RefSeq) phytoene synthase 2, chloroplastic-like
KO
K02291
15-cis-phytoene synthase [EC:
2.5.1.32
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00906
Carotenoid biosynthesis
pop01100
Metabolic pathways
pop01110
Biosynthesis of secondary metabolites
Module
pop_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
18097235
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pop01006
]
18097235
Enzymes [BR:
pop01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.32 15-cis-phytoene synthase
18097235
Prenyltransferases [BR:
pop01006
]
Terpene biosynthesis
Squalene/phytoene synthase
18097235
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HTH_25
Motif
Other DBs
NCBI-GeneID:
18097235
NCBI-ProteinID:
XP_006386055
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Position
3:complement(21300569..21302938)
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AA seq
382 aa
AA seq
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MCSTFSLSAKPCAGAHNGKFLHSKSLVTRARAGVFTVPKRLSRQAFPQLLKQGIPHTDLE
VHEIVERQSQANVLGKQDTCRKSEFHPMFLEGAYGRCRNICAEYAKTFYLGTLLMTEERQ
KAIWAIYVWCRRTDELVDGPNAVHMSTAVLDRWEERLQDIFDGFPYDMLDAALTDTISKF
SLDIKPFRDMIEGMRMDTRKFRYDNFQELYMYCYYVAGTVGLMSVPVMGIAAESSVSALS
IYNAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDKDVFARKVTDEWRELM
KEQITRARFYFNLAEEGASQLEKASRWPVWSSLLIYRKILDAIEDNDYDNFTKRAFVGRT
KKLFTLPLAYSKAQPMSSMIFQ
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgtgttctacattttcgctttcggctaagccttgcgctggggcacataatggcaaattc
ctgcattcaaaatccttagttacaagagcaagagctggagtgttcacagttccaaagaga
ttgagccgacaggcttttcctcagctattaaaacaaggaattcctcatactgatcttgaa
gtacatgaaattgttgagaggcagtctcaagctaacgtcttgggcaagcaagatacgtgt
agaaagtcagagttccatcccatgtttcttgaaggagcttatggaaggtgcagaaacatt
tgcgccgaatatgccaagacattctatctaggaactctgctgatgacagaggagcgacag
aaagccatatgggcaatatatgtatggtgcaggaggacagacgaactggtcgatggccct
aatgcggtgcacatgagcactgctgttcttgataggtgggaagagaggctgcaagacatc
tttgatggattcccctatgacatgctcgacgctgcacttaccgatacgatttccaagttt
tctttagacattaagccttttagggacatgattgaaggtatgagaatggatactagaaaa
tttcgctatgataattttcaagagctctatatgtattgctactacgttgcgggcacagtc
ggccttatgagtgttccagtgatgggaattgcagcagaatcttcggtttctgctctaagt
atttataatgcagcactgtacttgggtattggaaatcaactgacaaacattcttagagat
gttggagaggatgctttgagagggagagtttatcttccacaagatgagcttgcacagttt
ggtctatgcgacaaggatgttttcgcaagaaaagtcactgatgaatggagagagttaatg
aaggagcagataacaagggcaagattctatttcaaccttgcagaagagggggcttcacag
ctcgaaaaagctagccgatggccggtatggtcatccttgctgatatacagaaaaatcttg
gatgcaattgaggataatgattatgataacttcacaaaacgagcttttgttggaagaact
aagaaacttttcacattgcccctagcatactccaaagctcaaccgatgtctagcatgatc
tttcagtaa
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