Populus trichocarpa (black cottonwood): 18097705
Help
Entry
18097705 CDS
T01077
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1 isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
18097705
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
18097705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_8
Motif
Other DBs
NCBI-GeneID:
18097705
NCBI-ProteinID:
XP_006384308
UniProt:
U5GF75
LinkDB
All DBs
Position
4:complement(11832030..11837291)
Genome browser
AA seq
473 aa
AA seq
DB search
MSTSGQPQFRYTQTPSKVLHLRNLPWECTEEELIELCKPFGRIVNTKCNVGANRNQAFVE
FVDQNQAIQMVSYYASSSDPAQVRGKTVYIQYSNRHEIVNNKSPGDNPGNVLLVTIEGVE
AGDVSIDVIHLVFSAFGYVHKIATFEKAAGFQALIQFTDSETASSARNALDGRSIPRYLL
PEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGPVQPTVGVDGKKKEP
ESNVLLASIENMQYAVTIDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDVATAAVAKE
TLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTIPDASLIAAQAPGLHTAPTMWQ
NPQAGSMYTGNNYATTAAVPVQVPPGQVPAWDPTMQAGGQGYASVPGTYPGQTYPTPPAS
AYATAAIPAGSSPRSHSSPISHSVASMAMSHPGMQSNLRPSGASPPGQPPYYG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgtcgggacagccacaattccggtacacacaaacaccatcaaaggttttgcat
ctacgaaaccttccatgggagtgcacagaagaagagctaatcgagctctgtaaacctttt
ggaaggatcgtaaatactaagtgcaatgtgggcgccaatcggaaccaagcctttgtcgaa
ttcgtagaccaaaatcaggcaatacaaatggtatcgtattatgcgtcgtcgtcggaccca
gcgcaggttcggggtaaaacggtgtatattcaatattcgaacaggcatgaaattgtgaac
aataagagtccaggtgataatcctggaaatgtattgttggttaccatcgagggtgttgaa
gctggtgatgtcagcatcgatgtcattcacttggtgttttctgcttttggctatgtgcac
aaaattgctacttttgaaaaggctgctggtttccaggcattaattcaattcactgattct
gaaactgcatcttcagcaagaaatgccttggatgggagaagcatacccaggtacttgctt
ccagagcatgttggttcctgccacttacgcatttcgtattctgcgcataccgatctcaat
atcaagttccagtcccataggagcagagactatacaaatccatatctccctgtgaatcct
actgcaatcgagggacctgttcagcctactgttggcgttgatggaaagaagaaagaacct
gagagcaatgtgcttcttgcatcaattgagaatatgcagtatgccgtcaccatcgatgtt
cttcacactgtattctctgcatttggtactgtccagaagattgctatattcgagaaaaat
ggtggaacacaggcgctaattcagtacccagatgttgcgactgcagcagtagccaaagaa
actctggagggacactgcatttatgatggtggctattgtaagcttcatctatcatactct
cgtcatactgatctcaatgtaaaggcctatagtgataaaagtagagattacaccatccca
gatgcaagtttgattgcagcacaagctcctggccttcacactgctcctacaatgtggcag
aatcctcaggctggctcaatgtacactgggaataactatgctaccactgctgctgttcca
gttcaagttcctcctgggcaagtgccagcttgggatccaaccatgcaggcaggtggacaa
ggctatgcatcagttcctggcacttatcctggtcaaacatatccaacacctccagcgtct
gcttatgctactgctgcaatacctgcaggctcctctccccggtcacatagcagcccaatt
tctcatagtgtggcttctatggcaatgagccacccagggatgcagtcaaacttgcgacct
agtggtgcttcacctccgggtcagcctccatattatggttga
DBGET
integrated database retrieval system
