Populus trichocarpa (black cottonwood): 18097791
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Entry
18097791 CDS
T01077
Name
(RefSeq) protein CHROMATIN REMODELING 25 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
18097791
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
18097791
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
18097791
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SLFN-g3_helicase
AAA_22
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
18097791
NCBI-ProteinID:
XP_006384415
UniProt:
U5GLI1
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Position
4:16417344..16425595
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AA seq
932 aa
AA seq
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MEDDQVEEEEEESLSPSDSSDEYTVDREEEDDDGEEGERRVAHYPQFDEDRKSKNVDDLL
RGNLVVRRQSLLPRVLSVTEGAAICRKPFKPPCSNGYNDGNEQLARRLWARKRFVPWGSS
RPVLVAVTNIFNVPSVVENEVVEESVTLPPGIDPLVLWQPEESEDGVGNLMPIVVDPLLV
RFLRPHQREGVQFMFECVSGFYSTANINGCILADDMGLGKTLQSITLLYTLLGQGFDGKP
MVKKIIIATPTSLVSNWEAEIKKWVGERVKLIALCESTREDVISGIDSFTNPSSPFQVLI
VSYETFRMHSSKFSNSESCDLLICDEAHRLKNDQTITNRALASLSCKRRILLSGTPMQND
LEEFFAMVNFTNPGVLGDAAYFRRYYETPIICGREPTATEEEKKLGAERSGELSVKVNQF
ILRRTNALLSNHLPPKIVEVVCCKLTPLQAELYNHFIHSKNVKRAITEEAKKSKILAYIT
ALKKLCNHPKLIFDTIKNGSPGISGFEDCMRFFPPGMFSGRSGSWTGGDGTWVELSGKMH
VLARLLAHLRLRTDDRIVLVSNYTQTLDLFAQLCRERRYPHIRLDGTTSISKRQKLVNRF
NDPSKEEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIY
RFLSTGTIEEKVYQRQMSKEGLQKIIQHEQNDSLAAQENCLSTEDLRDLFTFQENVRSEI
HVKMNCARCLFSDGELEGIGDVDESTYENCMPNQEVFDIGGFAAIAGCLDKLKSSEKQVG
TPLEEDLGSWGHHFHSTSVPDTILQASAGDEVSFVFTNQVDGKLVPIESKPSPRVLGIKG
NESRLNDKENLDQNPKLSRYQKPQQSLSSNIDAKKVAPSASLMTLQRPGVKRMRTPLKGM
ANAELKSKLSFGSQLPLKRPSPSDLEHDDSFQ
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgatcaagtagaagaagaagaagaagagagtctctcaccctccgattcaagc
gacgagtacactgtcgatcgcgaagaagaagacgacgacggcgaggagggagagcgacga
gtggcacactatccacagttcgatgaagatcgcaagtcgaagaatgtagacgatcttttg
agaggcaaccttgtagtaaggagacagtcactgcttcctcgagttctttcagtgacagaa
ggggcagctatttgtcggaaaccctttaaacccccatgttccaatggttataatgatgga
aatgaacagcttgctcgtcgactttgggcccggaaacggttcgttccatggggttcttca
agaccagtgttggttgcagtaacaaatatatttaatgtaccaagtgtggtggagaacgaa
gtagtggaggaaagtgtgactttgccacccggtattgatcctttggtgttgtggcaacct
gaagagtctgaggatggagttggtaatttgatgccgatagtggtggatcctttgcttgtt
cggttccttcgacctcatcaaagagaaggggttcagttcatgtttgaatgtgtttcggga
ttttatagcactgcaaatattaatggatgcattctggctgatgatatgggtctggggaag
acactgcagtcaatcacattgctgtacactcttcttggtcaagggtttgatggaaagcct
atggttaaaaaaatcattattgccaccccaaccagccttgtaagtaattgggaggctgaa
atcaaaaagtgggttggggaaagagttaagcttatagctctctgtgaaagcaccagagaa
gatgttatctctgggattgacagtttcacaaatcctagcagccctttccaggttctgatt
gtttcatatgagacgttccggatgcattcttcaaaatttagcaatagtgaatcttgtgac
cttctcatatgcgatgaggcccacagacttaaaaatgatcagacaataacaaatcgggca
ctggcttccctgtcatgcaaacgccgcatcttgttgtcaggaactccaatgcaaaatgac
ctagaagagttttttgcaatggttaacttcaccaatccaggagttttgggtgatgctgca
tattttcgccgttactatgagacaccaatcatttgtggaagggaaccaactgccactgaa
gaagagaagaagctaggtgctgaacgctcaggagagttgagtgtgaaagtaaatcagttt
atactgagaaggacaaatgcattgctatcaaatcacctgccgccaaagattgtagaagtt
gtttgctgcaagttgactcctctccaggcagagttatataaccattttatacattcaaaa
aatgttaaacgggcaatcactgaagaggcaaagaaatcaaagatattggcctacatcaca
gctcttaagaagctgtgcaatcatccaaagcttatctttgacaccataaaaaacggaagt
ccaggaatttcagggtttgaggactgcatgcgctttttccctcctgggatgttctctgga
agatctggttcatggactggtggtgatgggacttgggttgaactgtctggtaaaatgcat
gtcttggcccgattacttgcccatctacgtctgagaacagatgatcgcattgtacttgtc
tcaaactatactcagacacttgacctttttgctcaattgtgtcgtgaaagaagatatccc
catataaggcttgatggaaccacatcaatcagtaaaagacagaagttagttaatcgcttt
aatgatccatcaaaggaagagttcgtatttctcttaagcagtaaggctggtggctgtggc
ctcaatctaatcggtggtaaccgacttgtcttgtttgatccggactggaatcctgccaat
gacaagcaagcagctgcgagagtttggcgggatggacaaaagaagagggtatatatctac
agattcctgagcaccggaaccattgaagaaaaggtttatcagcgtcaaatgtcaaaagag
gggcttcaaaaaattattcagcatgagcaaaatgatagccttgcggcacaggaaaattgt
ctttcaactgaagatttacgtgatttgttcacatttcaggagaatgtcaggtctgaaata
catgtaaagatgaactgtgcccgctgtctattttctgacggggaacttgagggcatagga
gatgtagatgaatctacatatgagaattgtatgcccaatcaagaggtgttcgatataggt
ggctttgctgcaattgctggatgcctggacaagttgaagagctcagagaagcaagtaggg
actcctttggaagaggatttgggcagctgggggcatcattttcactcgacatcagtgcct
gatactatacttcaagcttcagctggtgatgaggtttcttttgtcttcacgaaccaagta
gatgggaagcttgtaccaattgaatcaaagccaagtccaagggtgctggggataaaaggg
aacgagagccggctcaatgataaagaaaatctggaccaaaatccgaagttatctcgttat
cagaaaccacaacaatctctatcttccaacatagatgctaaaaaggtcgcaccatctgcc
tctctcatgactttgcaaagaccaggtgtgaaacggatgagaactcctttaaaaggaatg
gctaatgcagaattaaaatctaaactctcttttggaagtcaactgccattgaaaagacca
tctccttccgatttagaacatgatgatagttttcagtaa
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