Populus trichocarpa (black cottonwood): 18097845
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Entry
18097845 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18097845 isoform X2
KO
K17925
sorting nexin-13
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pop04990
]
18097845
Domain-containing proteins not elsewhere classified [BR:
pop04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
18097845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PXA
Nexin_C
PX
Motif
Other DBs
NCBI-GeneID:
18097845
NCBI-ProteinID:
XP_006384470
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All DBs
Position
4:16896460..16907319
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AA seq
1049 aa
AA seq
DB search
MKAMETVHDLIEEAKLRTVWWCLCIFSATYFLSHTSSSMWMNLPISILIVSALRILSNEV
EFSWKARRSVHRQSYLSHLEKKQLSKNDSRLSSVPPAPKWKRKIDSPVVEAAIGGFIDKI
LKDFVVDLWYSEITPDREAPELIRSVIMDALGEVSGRAKEINLIDLLTRDLVDLIGDHLD
LFRRNQAAIGADVMATLSTEERDERLKHHLMASKELHPALISLESEYKVLQRLIGGVLAI
VLRPREAQCPLVRTIAREIVTCLVMQPLMNLASPVYINEVLELILLSIKDDSPKDTVGDQ
PAESVHNADSTLRKDPSVNSQRTGIVDNKRDYQGTDTTLSKIDDCGEMYLDYDSQQDHMQ
PHPAEWARMLEVATQRRTEILTPENLENMWTKGRNYKMKEKKKVKAGVQQSMAKSLVTSI
ATDSNLGKDMLMNTNVIFKEMDEKAIGRLTPRLSLDTLTSHENKDGRQSTQDGSQELSFE
GAHVGGELENAGNLSLNEKRGGLKRSNSTSALEALPDKNNAFTGDGGGSIISEFYSPDFH
RSPDHAVKVSNMVVSSEGRHSPKLKCRVMGAYFEKLGSKSFAVYSIAVTDAENRTWFVRR
RYRNFERLHKHLKEIPNYTLHLPPKRIFSSSTEDAFVQQRCIQLDKYIQDLMSIANVAEQ
HEVWDFLSVSSKNYSFAKSSSVMRTLAVNVDDAVDDIVRQFKDVSDGFMRKVVGSTSPLD
ETNSSIYNRNLSWHLDDVNKHVSRQDTLETANSYSETEECHNQGSYDQKGVGSTAEASGC
HSVNELNANGFPPLVFKHDEESRALGLEKKPVLEEKSERINHGVFSVANSAIASSHMDDP
VGMPPEWTPSNVSVPLLNLVDKVFQLKRRGWLRRQVFWISKQILQLIMEDAIDDWLLRQI
YWLRREDTIAFGIQWVQDILWPNGMFFTRARVAQSKVDDDQLNLIPFQISQLSGCKVSNK
GSFEEQLEAACRASDIKNMLFDGAPATLVSLIGNKQYKRCARDIFYFTQSTICVKQLAYG
ILELLVISVFPELRDVLLGLNEKMRAPPA
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctatggagacggtacatgatctgattgaagaagctaaacttcgaacggtttgg
tggtgtctttgtatcttttccgccacttacttcttatctcatacaagttcatcaatgtgg
atgaatctacccatatcaattctcattgtgtctgcactaagaattttgtctaatgaagtg
gagttcagctggaaagcacgccggtcagttcatcgacagtcttatttgtcacatttggag
aagaaacagttgtctaagaatgactcacgactttcttctgtgccaccggcaccaaagtgg
aagaggaaaattgattctccagttgttgaggctgcaattggtggtttcatcgataagata
ttgaaggattttgtggtagacctatggtattcagaaattacaccagatagggaggcgcct
gagctgatacggtcggtaatcatggatgctcttggtgaggtatctggaagggctaaagag
ataaatcttattgacttgctaactagggatttagttgatttaataggggatcacttagac
ctctttagaagaaatcaagcagctataggagccgacgtgatggcaactctttctactgaa
gagagagatgaaaggttgaaacaccatctaatggcttctaaggagcttcatcctgcattg
atatctctcgagagtgagtacaaggttcttcagcgactgattggtggagttttagctata
gtacttagacctcgtgaagctcaatgcccgctggttcggactatcgctcgagagattgta
acttgcttggtaatgcaacctcttatgaatcttgcaagccctgtgtatatcaatgaggta
cttgaattgattttactttccattaaagatgatagtccaaaagatactgttggtgatcaa
cctgcagagagtgtgcataatgctgactctaccttgagaaaagatccctctgtaaatagt
caaaggactggaattgttgacaacaaaagagactatcaaggaacagatacaactttgtct
aaaattgatgattgcggagaaatgtacttggattatgactcacaacaagaccatatgcag
ccacatcctgcagagtgggcacgaatgctagaggtggcgacccagagaagaacggaaatt
cttacacctgaaaatctggaaaatatgtggacgaaaggaagaaactataaaatgaaagag
aaaaaaaaagttaaagcaggggttcagcaatcaatggcaaagagtttagttacaagcatt
gcaactgattctaatttaggaaaagacatgctgatgaataccaatgtaatctttaaagaa
atggatgagaaagctatagggcgcctaacacctagattgagtctagatactttaacaagt
catgagaacaaagatgggagacagtctactcaggatggtagccaggaattgtcttttgaa
ggcgcacatgttggtggtgaattggagaatgccggcaatctctctttgaatgaaaaaaga
ggtggacttaagagatccaatagcacctctgctctagaagccctgcctgataaaaataat
gcatttacgggagatggagggggatccattatctcagaattttatagcccagattttcat
aggagtccagatcatgctgttaaggtctcaaacatggtagttagtagtgagggacgtcac
agtcccaagctgaagtgtcgggtcatgggagcatactttgagaaacttgggtcaaaatct
tttgcagtttactcaatagcagtgacagatgcagaaaacagaacttggtttgtgagaaga
agatacaggaattttgagagattgcataaacatctgaaagagatcccaaattacacattg
cacttacctcccaaaaggatattctcatcaagcactgaagatgcttttgttcaacaacga
tgtattcagcttgataaatatattcaagatctcatgtctatagccaacgttgcggagcag
catgaagtttgggatttcttaagtgtttcctcaaagaattattcttttgcgaaatcttcc
tcagtcatgagaaccctggcagtcaatgtggatgatgctgtggatgatattgtgcggcaa
ttcaaagatgtttcagatggctttatgcgtaaagttgttggttcaacttccccactcgac
gaaaccaattcctcaatctacaacaggaacttgtcctggcatttggatgatgtgaataaa
catgtctcaaggcaggatactttagaaactgcaaacagctattctgaaactgaagaatgt
cataatcaaggaagctatgaccagaagggagttggatctactgcagaagccagtggttgt
cattcagttaatgaattgaatgcaaacggttttcctcctctggtgttcaaacatgatgag
gagtcacgggccttaggtttagagaaaaaacctgtattagaggagaaaagtgaaaggatt
aaccatggcgtgttttctgtagcaaactctgcaatagcttccagtcatatggatgatcca
gttggaatgccacctgagtggactccttctaatgtaagtgtacctctgctaaatctagtc
gataaggtgtttcagcttaaaagaagaggctggctgagaagacaggtcttttggatatca
aagcaaatactgcagttaataatggaagatgctatcgatgactggcttttgaggcaaatt
tactggcttcggagggaggacactattgcttttgggattcaatgggtgcaagatattctc
tggccaaatggcatgttctttacgagagcaagggttgcacaaagcaaagttgacgatgac
caactaaatctcataccttttcagattagccaactgagtggctgtaaggtctctaataag
ggttcattcgaggaacaactcgaggctgcttgtagagcaagtgatatcaaaaatatgctc
tttgatggagctcctgcaactttagtcagcttgattggaaataaacagtacaagcgctgt
gcaagagacattttctatttcactcagtctactatctgtgtgaagcagcttgcatatgga
atacttgaactattagttatatcagttttccctgagctccgggatgttttgctgggtctc
aacgagaagatgcgtgctccacccgcatag
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