KEGG   Populus trichocarpa (black cottonwood): 18097994
Entry
18097994          CDS       T01077                                 
Name
(RefSeq) splicing factor U2af small subunit B
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18097994
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    18097994
Spliceosome [BR:pop03041]
 Complex A
  U2 snRNP components
   U2 related factors
    18097994
 Complex B
    18097994
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4 Torus zf-CCCH_4
Other DBs
NCBI-GeneID: 18097994
NCBI-ProteinID: XP_006384672
UniProt: U5GJS9
LinkDB
Position
4:complement(20141664..20144244)
AA seq 320 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSNMYQRPDMITP
GVDAQGNPIDPRRIQQHFEEFYEDLFEELRKYGEIESLNVCDNLADHMVGNVYVQFREEE
HASNALKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENACNRGGYCNFMHLKRIGREL
RRQLFGSYRRRRSHSRSRSPYRHRSHEEHSHSGRGSGRRYDDREHYYESRSRRHRSTSPG
HRKGRSRSPGGRRKRSPVREGSEERRAKIAQWNREREQQEGTANNNVNADSSNNDNGQMQ
NGSGQEYQQHIPPQQGEYAY
NT seq 963 nt   +upstreamnt  +downstreamnt
atggcggagcacttggcgtcgatattcggaacagagaaagacagagtgaactgtccgttt
tacttcaagatcggagcttgtagacacggtgatcgatgctctcgtctccacaccaaacca
agcgtcagccccacgcttcttttatcaaacatgtaccagcgccctgatatgattactcct
ggtgttgacgcccagggtaaccctattgatcctcgcaggatccagcaacacttcgaggaa
ttttatgaggatttatttgaggagctaagaaaatacggggaaattgagagcctgaatgtc
tgtgacaatcttgctgaccacatggtgggtaatgtttatgttcagttcagagaggaagag
cacgcttcgaatgcgcttaagaatttgactgggaggttttatgctggtcgtcctattatt
gtggatttctcgcctgtgactgatttccgagaagccacgtgtaggcaatatgaggagaac
gcatgtaaccgtggcgggtactgcaattttatgcaccttaaaagaatcggcagggagttg
aggcgtcagttatttgggagttaccgacgaaggcgtagccacagccgaagcaggagcccc
tatagacatcggagccatgaagagcattcacatagtgggcgtggttctggtcgaagatat
gatgatcgggagcactattatgaaagtcggagcaggaggcataggagtacaagccctgga
catcggaagggacgaagtagaagccctggggggaggcgtaaacgaagcccggttagggaa
ggcagtgaggagaggcgtgctaaaattgcacaatggaatagggaaagggagcagcaggaa
ggaacagccaataataatgtcaatgctgacagcagcaacaatgacaacgggcaaatgcaa
aatggcagcggtcaagaatatcagcagcacataccaccgcagcaaggagaatatgcatac
tga

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