Populus trichocarpa (black cottonwood): 18098141
Help
Entry
18098141 CDS
T01077
Name
(RefSeq) ubiquitin domain-containing protein DSK2b
KO
K04523
ubiquilin
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
18098141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
18098141
03051 Proteasome [BR:
pop03051
]
18098141
Membrane trafficking [BR:
pop04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
18098141
Proteasome [BR:
pop03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
18098141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
UBA
Rad60-SLD
STI1-HOP_DP
UBA_7
UBA_NBR1_C
UBA_HOIP
Ubiquitin_2
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
18098141
NCBI-ProteinID:
XP_006384838
UniProt:
U5GGQ0
LinkDB
All DBs
Position
4:21329490..21333050
Genome browser
AA seq
569 aa
AA seq
DB search
MGGAGDSSESKVSNEQGQGQGEEGGVVINVRCSNGTKFTVRTSLESTVGVFKSVLARNCD
VPADQQRLIYKGRILKDDQTLLSYGLQADHTVHMVRGFAPASSTPAPAAAATATAAAGGN
PDTTTGVTPGVGSNEGGAFGLGGAGLGASLFPGLGSLGGGGGGATGSFGAGFSELEQVQQ
RLTQNPNMMREIMNTPAMQSLMNNPELIRSLMMSNPQMREIMDRNPELAHVLNDPSILRQ
TLEAARNPELMREMMRHTDRAMSNIESTPEGFNMLRRMYENVQEPFLNATTMGGNAGSDL
GSNPFAALLGNQGGTQVRDASNNPSTTGSEATGGLTAPNTNPLPNPWNNAAGGTQTNSTT
RPNPAGNVRASGLGDLGLGGLGLPGMESMFNGMPDSNQMNQLLQNPAVSQMMQTVLSNPE
YMNQMLNFNPQLRSMVDSNPQLREMMQNPELLRQLTSPETMQQMLALQQSLLPQLRQQST
QEAAQPGAPTGTPNNTGLEMLMNMFGGLGAGSLSAPNQPDVPPEELYATQLSQLQEMGFF
DTQENIRALRATAGNVHAAVERLLGNLGQ
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgggaggtgctggcgattcgagcgagtcaaaagtgagtaatgaacaggggcaagggcag
ggagaggagggaggtgtggtgattaacgttcggtgctctaatggtacaaaatttactgtg
aggacgagcctggaatcaacggttggggttttcaaatctgttctggctcgaaattgtgat
gttccagctgatcaacagaggttgatttataaaggtcggattttgaaggatgaccagacc
cttcttagttatggtctgcaagctgatcacaccgttcatatggttcgtggttttgcccct
gcttcgtcgactcctgctcctgctgctgctgccaccgccaccgccgctgctggtggaaat
cctgatactacaacaggggttacaccgggtgttggttctaatgaaggtggggcttttgga
cttggaggtgccggtttgggggcatctttgttccctggacttgggtcactaggtggcggt
ggcgggggcgcaactggttcatttggagctggtttttctgaattggaacaagtgcagcaa
cggctaactcagaatcccaacatgatgagggaaattatgaatacccctgctatgcagagt
ctgatgaataaccccgagttgatacggtccttgatgatgagtaatcctcagatgcgcgag
attatggaccggaatcctgagcttgcacatgtgcttaatgatcctagcattcttcgacag
acattagaagctgctagaaaccctgagctcatgcgtgagatgatgagacacactgacagg
gctatgagtaatattgaatcgactcctgaaggatttaacatgctccggagaatgtatgaa
aatgttcaagaaccatttttaaatgctacaacaatgggtggaaatgctggcagtgatttg
ggttcaaatccatttgcagccctcctggggaaccaaggtgggactcaggtcagggatgca
tcaaacaacccttcaaccactggttctgaagcaactggagggctcactgctcctaataca
aacccactgcccaacccttggaacaatgctgctggaggtacccagacaaacagtactacg
aggccaaatcctgctgggaatgtgagggcctcaggtcttggtgatttgggtctgggaggg
cttggtctcccaggaatggaaagcatgtttaatggcatgcctgattctaatcaaatgaat
cagttgttgcaaaatccagctgtatcacagatgatgcaaactgtactctccaatcctgaa
tacatgaaccagatgctcaacttcaatcctcaactacgaagcatggttgattcaaatcct
cagttgagagaaatgatgcaaaacccagagcttcttcgccaattaacttctcccgaaaca
atgcagcaaatgctcgctttacaacagtcacttcttccacagctccgacagcaatcaacc
caggaagcggcacagcctggcgcccctacaggaacacctaataatactgggctggagatg
ttgatgaacatgtttggtggtcttggagcaggcagcttatctgcacctaaccaacctgat
gtgcccccggaagaactttatgcaactcaactatcacagctacaagaaatgggtttcttt
gacacccaagagaatatcagggcactgcgtgctacagctggaaatgtacatgctgcagta
gagcgtcttctggggaatcttggccaatga
DBGET
integrated database retrieval system
