Populus trichocarpa (black cottonwood): 18098230
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Entry
18098230 CDS
T01077
Name
(RefSeq) ABC transporter F family member 1
KO
K06185
ATP-binding cassette, subfamily F, member 2
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
18098230
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
18098230
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Paralog
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GFIT
Motif
Pfam:
ABC_tran
ABC_tran_Xtn
AAA_21
SMC_N
AAA_29
MMR_HSR1
AAA_23
AAA_14
AAA_22
AAA_28
RsgA_GTPase
AAA_15
AAA_24
VapE-like_dom
Ig_F54D1_6_2
AAA_30
Motif
Other DBs
NCBI-GeneID:
18098230
NCBI-ProteinID:
XP_006384938
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All DBs
Position
4:complement(22073779..22078509)
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AA seq
602 aa
AA seq
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MVSEASKKKAAQKKAAAAAKRGGKAAATSSKRAAATAASDSQNEGVDKLSNGAGVLQISD
RTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLAA
IGCRELPIPDHMDIYHLTREIEASDMSSLEAVISCDEERLKLEKEAEVLAAEDDGGGEAL
DRIYERLEAMDASTAEKRAAEILYGLGFNKKMQEKKTRDFSGGWRMRIALARALFMNPTI
LLLDEPTNHLDLEACVWLEETLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKIYTGN
FDQYVQTRSELEENQMKQYKWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERG
GLTEKVARDKILVFRFVNVGKLPPPVLQFVEVTFGYTPDNLIYKSIDFGVDLDSRIALVG
PNGAGKSTLLKLMTGDLVPLDGMVRRHNHLRIAQFHQHLAEKLDLEMSALQYMIKEYPGN
EEERMRAAIGKFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIET
IDSLAEALNEWDGGLVLVSHDFRLINQVAEEIWVCENQAVTRWEGDIMDFKKHLKMKAGL
SD
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggtttcggaagccagcaagaagaaggctgctcaaaagaaggcggccgcggcggctaag
cgaggtggcaaagcagcagcaacctcctcaaaaagggcagcggcgacggcggcgtctgat
tcgcagaatgaaggtgttgataagttgtcgaatggagctggagtccttcagatatccgat
cggacttgtacaggcgtcctctgttcccatcctctttccagagatattcgaatcgagtcg
ttgtcagttacttttcatggacatgatctcattgtagattctgagctggagcttaactat
ggcagacgatacggactacttggtttaaatggatgtgggaaatcaaccctcctagctgcc
atagggtgtcgggaacttccaattccagaccacatggacatatatcacctcaccagggag
atcgaagcctctgacatgtcttcacttgaggctgtgataagctgtgatgaggagaggttg
aaattggagaaggaagccgaagtcttggcagcagaggatgatggaggtggagaagctctt
gatcgtatttatgagcgtttggaggccatggatgcatcaactgctgagaaacgtgctgct
gaaattttgtatggtcttgggtttaacaagaaaatgcaagaaaagaaaactcgagatttt
tctggtggctggagaatgagaattgcactagctcgggctttgttcatgaacccaactatc
ctcttgcttgatgagccaaccaatcatcttgatctagaagcctgtgtctggttggaggaa
actttgaagaagtttgaccgcattctagttgtggtctcacattcccaggatttcttgaat
ggtgtctgcacaaacattatccatatgcaaaacaagaaattgaaaatctacactggtaac
ttcgatcagtatgttcagacccgttctgaactggaagaaaatcagatgaaacaatacaag
tgggagcaggatcaaattgcttccatgaaggagtatattgcccgatttgggcatgggtca
gcaaaattagctcgccaggcacagagcaaggagaaaactcttgcaaaaatggagcggggt
ggacttacagaaaaggttgcgagagacaagattctggtctttcgctttgtcaatgttgga
aagctcccaccaccagtgcttcagtttgtggaagtaacctttggctacacacctgataat
ctcatctataagagtattgacttcggtgttgatctggactctaggattgcgctggttggg
ccaaatggtgctgggaagagtaccctactgaagcttatgacgggtgatttggttccttta
gatggtatggttcggcggcacaatcacttgaggattgcacaatttcaccagcacttggct
gagaagcttgacttggaaatgtctgccctccagtatatgattaaagagtatccagggaat
gaggaggaaagaatgagggcagctattgggaagtttgggttgacaggcaaggcccaggtg
atgcccatgaagaacttgtcagatgggcagaggagcagggtgatatttgcttggctggcg
tataggcagccccacttgctactgctggatgagccaacaaaccatttggatattgagacg
attgactctctggctgaggcattgaatgagtgggatgggggtcttgttcttgttagccat
gatttcaggctcataaatcaggtagcagaggagatttgggtatgcgaaaatcaagctgtt
acccggtgggagggtgacattatggacttcaagaagcacctcaagatgaaggccggtttg
tctgattaa
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