Populus trichocarpa (black cottonwood): 18098308
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Entry
18098308 CDS
T01077
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X4
KO
K18995
ATP-dependent RNA helicase DHX29 [EC:
5.6.2.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
pop03012
]
18098308
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18098308
Translation factors [BR:
pop03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
18098308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
HA2_C
Helicase_C
HA2_N
DSRM_DHX29
nSTAND3
DND1_DSRM
AAA_19
AAA_22
ATPase
Motif
Other DBs
NCBI-GeneID:
18098308
NCBI-ProteinID:
XP_006385023
LinkDB
All DBs
Position
4:22737125..22765555
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AA seq
1164 aa
AA seq
DB search
MFSTSTPCEHLEAITSLDVEGDSTIVESIVDENDLESSSSIGFPLNPVPSSVPLEGEIVS
EESEDVEIGDFFIDDASSNDALPPGILELQKREKMRELCSEKNLEKLEGIWKKGDPQKIP
KAVLHQLCQKSGWEAPKFNKVLERELGFSYAVSILRKASGRGKSRKAGGLISLQLPDQDD
TFESAEDAQNRVAAFALHQLFPDLPIHLAIINPYSSLVLQWKQGETSKRVEDSVEDRRAG
FVDLLLKADGSSSSAVDATTSSQETLKITDVEETKDSGADAKVERKKYAKDAESSYLRQE
QESKRKLKKYKEMLCSRAALPIAGLKVDILQMLKENDVLVVCGETGSGKTTQVPQFILDD
MIESGHGGNCNIICTQPRRIAAISVAERVADERCEPSPGAVGSLVGYQVRLDSARNEKTK
LLFCTTGILLRKLAGDRSLSGITHVIVDEVHERSLLGDFLLIVLKNLIEKQSSQDTPKLK
VILMSATVDSSLFSRYFGQCPVLTAQGRTHPVTNYFLEDIYEYINYNLASDAPAALRYET
SAFDKSGPVDNHRGKKNLVLSAWGDDSQLSEDCINPHYISTSYQTYSEQTQKNLKRLNEE
IIDYDLLEDLICYVDETCGEGAILIFLPGVSEIYMLLDRLVASYRFGGPSSDWVLPLHSS
IASKDQKKVFLWPPENIRKVIIATNIAETSLTIDDVVYVIDCGKHKENRYNPQKKLTSMV
EDWISQANARQRRGRAGRVKPGICFCLYTRHRFEKLMRPYQVPEMLRMPLVELSLQIKLL
SLGHIKPFLSKALEPPREEAMTSAISLLYEVGALEGDEQLTPLGHHLAKLPVDVLIGKML
LYGAIFGCLSPILSISAFLSYKSPFVYPKDEKQNVERAKLALLADKIDGSNDSNYNDRLS
DHLLMMVAYKKWEKILSERGFKAAQQFCATYFLSSSVMHMIRDMRTQFGTLLADIGLISI
PKSYQVGRMKKENLDSWLSEKSQPFNMYSHHSSLVKAILCAGLYPNVAATELGITAATLN
GLKQSSRPGKKDHPIWYDGRREVHIHPSSVNCNMKAFPHPFLVFLEKVETNKVFLRDTTI
ISPFSILLFGGEINIQHQTGLLTIDGWLKLKASAQYAVLFKELRSTLHALLKELIRKPEN
ATLVDNEVVKSMIQLLLDEDKPQT
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgttttctacttccactccttgtgagcaccttgaggcaataacatcattggacgtggaa
ggtgattccaccattgttgaatcaatagttgatgaaaatgatttggaaagttcaagctcc
attggttttccattgaatcctgttccctctagtgtgccccttgagggagaaattgtctcg
gaagaatcggaagatgtggagattggcgacttcttcatagatgatgcatcgtctaatgat
gctttacctcctggaatattggagttacagaagagggaaaaaatgagagagctgtgtagt
gagaagaatttagagaaattagaaggtatctggaagaagggggacccgcaaaagattcct
aaagctgttcttcaccaactatgtcaaaaatcaggctgggaagctccaaaattcaataaa
gtgcttgaaagggaactaggtttctcttatgctgttagcatattacgcaaagctagtggg
aggggcaagagcagaaaagctggggggcttatcagccttcaacttcctgatcaggatgac
acatttgaatctgctgaggatgcccagaacagagttgcagcatttgctcttcatcaactc
tttcctgatcttcctattcacctagcaatcatcaacccttactcttctcttgttttgcag
tggaaacaaggggaaacatcaaaaagagtggaagacagtgtggaggatcgaagggctggt
tttgtggatctattattgaaggcagatggttctagttcatctgctgttgatgctacaact
agttctcaagaaactttaaaaattaccgatgtcgaagaaaccaaggattctggtgctgat
gcaaaagtagaaagaaaaaaatatgctaaggatgcagaaagttcttatttgagacaggag
caagagtctaaaaggaaattgaagaaatacaaggaaatgctgtgctctagagctgcactt
cctattgctggattgaaggttgatattttacaaatgctgaaggagaatgatgttcttgtt
gtttgtggagaaacaggttctggaaagactactcaggtcccacaatttatactggatgac
atgattgagtcaggtcatggtggaaactgtaacattatatgcacacaaccaagaagaata
gcggctatatctgttgctgaaagagttgctgatgagcgctgtgaaccttctcctggtgca
gttggttctttggttggctatcaagttcggcttgatagcgcaaggaatgaaaaaacaaaa
cttctcttttgtacaacaggcattcttctaaggaagcttgcgggggataggagtttgagt
ggaataacacatgtcatagttgatgaagtgcatgaacgatctcttttgggtgattttcta
ctcattgttttgaagaacctgattgagaagcaatcttctcaagacacaccaaaacttaaa
gttattcttatgtctgccacagtagattcaagtttattttcgaggtactttggacaatgc
cctgtacttactgctcaaggccgtacacatcctgtgacaaattactttcttgaggatata
tatgaatacatcaattataacctggcttcagatgctccagctgctttaagatacgaaaca
tctgcatttgataagagtggtcctgtagataaccacagagggaagaagaatctagtttta
tctgcatggggtgatgattctcagctttcagaagactgtattaacccccattatatttca
actagctaccaaacttacagtgagcaaacacaaaagaatttgaaaagattgaatgaagaa
atcattgattatgaccttcttgaagacttgatatgttatgttgatgaaacatgtggtgag
ggtgccatactcatctttttgcctggcgtgtctgaaatttatatgctactcgataggttg
gttgcttcttatcgatttggaggaccatcttctgattgggttcttcctttgcattcatct
atagcatcaaaggaccaaaaaaaggtgtttctatggcctcctgaaaacatacgcaaggtt
attatagccaccaacattgcagagacaagtttaacaatagatgatgtcgtatatgtgatt
gattgtggaaaacacaaggaaaatcgttataatcctcagaagaaattgacaagcatggtt
gaagattggatatctcaagcaaatgcaaggcagcgccgagggagagctggacgagtaaaa
cctggaatttgcttttgcttgtacacacgccacagatttgaaaaactcatgcgtccttat
caggttcccgagatgcttcggatgccattagtggagctttctctgcaaattaaattactt
tctctgggacacataaagccatttttatccaaggctttagaacctccaagggaggaggct
atgacttctgcaatttcactgttgtatgaggttggagctttagaaggggatgaacaattg
acacctcttggacatcatttggcaaaacttccggtcgatgtactgattggaaagatgctg
ctttatggtgcaatatttggttgcttatcacctattctgtcaatttctgcattcctgagt
tacaagtcaccttttgtgtacccaaaagatgagaagcaaaatgttgaaagggcaaagctt
gcactgttagctgacaagatagatggctcaaatgattcaaattataatgacaggctttct
gaccacctcttaatgatggttgcatacaaaaaatgggagaagattttgagcgagagggga
tttaaagctgcacagcaattttgtgctacttattttttgagcagttcagttatgcacatg
ataagggacatgaggacacagtttggaacactgctagcagacattgggcttatcagtatt
ccaaagagttatcaggttgggagaatgaagaaagagaatcttgatagttggctgtctgaa
aaatcacaaccattcaacatgtattcacatcattcctcacttgtgaaggcaattttatgt
gcaggtttataccccaatgttgctgcaaccgaactaggaattactgcagcaactctcaat
ggcctaaaacagtccagcaggcctggaaaaaaggatcatccaatatggtacgatggaaga
agagaggttcacatacacccttcttcggtcaactgtaacatgaaagcatttccgcaccca
tttcttgtgttccttgaaaaggttgagaccaacaaagtatttctgcgagatactactatt
atatctcccttctctatcttgctctttggtggcgaaattaacattcaacaccagactggt
cttctcacgatagatggatggctaaagctgaaagcttcagcccaatatgctgtcttattt
aaagaactccgatcaacacttcatgctctattgaaggagctgattcgaaagccagagaat
gcaactcttgtggataatgaggtcgtcaaatccatgattcagctgttgttagatgaagac
aaaccccaaacatga
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