Populus trichocarpa (black cottonwood): 18098364
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Entry
18098364 CDS
T01077
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18098364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18098364
03041 Spliceosome [BR:
pop03041
]
18098364
03009 Ribosome biogenesis [BR:
pop03009
]
18098364
03016 Transfer RNA biogenesis [BR:
pop03016
]
18098364
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
18098364
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
18098364
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
18098364
Complex C
U4/U6.U5 tri-SnRNP related factors
18098364
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
Helicases
18098364
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
18098364
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Zot
Motif
Other DBs
NCBI-GeneID:
18098364
NCBI-ProteinID:
XP_024455261
LinkDB
All DBs
Position
4:23189918..23200499
Genome browser
AA seq
1006 aa
AA seq
DB search
MASVKRKSIESQQEDRPLLPPQKQLREDHSNNNSSSSKIIGHGEAVACLHDVSYPENYVR
PSSSSVTQIQKDSKPAKEFPFTLDPFQSEAISCLDSGQSVMVSAHTSAGKTVVALYAIAM
SLKNQQRVVYTSPIKALSNQKFREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQY
KGSETTREVAWIIFDEVHYMRDRERGVVWEESILMAPKNARFVFLSATVPNAKEFADWVA
KVHQQPCHIVYTDYRPTPLQHYIFPSGGEGLYLVVDEKAKFREDSFQKAVNALVPKAEGE
KKRENGKWQKGLNVSRLGEESDIFKMVKMIIRRQYDPVILFSFSKRECEFLAMQMAKMDL
NQDDEKANIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILF
QEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDD
RGVCILMVDEKLEPSTAKMMLKGSADSLNSAFHLSYNMLLNQMRCEDGDLENLLRNSFFQ
FQADRALPDLEKQAKVLEEERNSMVIEEEENLKNYYDLIQQYKSLKKDVRDIVFSPKHCL
SYLQSGRLVCIQCTESDDKSPSFLIEDLVTWGVIVNFDRVKGVSDVDVDDAIRKPENANY
TVDVLTRCVVTKDGVAKKKIKVVPLKEPGEPLIVSIPIDQINILSSARLYMSKDLLPLEV
RENTLKQVSEFLSRKPSGLPLDPEGDMNIQSSSYKKAVRRIEALEHLFEKHEIAKSPLIK
EKLKVLHTKQELTARIKLIRKSMRSSTSLAFKDELKARKRVLRRLGYITSDDVVELKGKV
ACEISSADELTLTELMFNGVLKDIKVEEMVSLLSCFVWQEKLQDAAKPREELDLLFTQLQ
DTARRVAKLQLECKVQIDVENFVSSFRPDIMEAVYAWAKGSKFYEIMEITKVFEGSLIRA
IRRLEEVLQQLIEAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagtgaagagaaaatccattgaaagccaacaagaggaccgtcctcttcttcct
ccacagaaacaactcagagaagatcacagcaacaacaatagtagcagttcgaagattatt
gggcatggcgaagcagttgcgtgtctgcacgacgtgtcgtatccagagaattatgtccgt
ccttcttcatcttcagttactcaaattcaaaaggactcaaaacccgcaaaggaatttcct
ttcactctcgacccttttcagtctgaagccatcagttgccttgacagtggccaatctgtg
atggtctcagctcatacatcagctgggaaaacagtagtagcattatatgcaatagctatg
tctttgaagaatcaacaaagggttgtttacacgtcacccatcaaagcacttagcaatcag
aagtttagggagttcaaggaggagttttctgatgttggtctcatgaccggtgatgttacc
attgaccctaatgcttcttgcctggtgatgactacggaaatttggcgaagtatgcagtat
aaagggtcggaaactactagggaagtagcttggattatctttgatgaggttcattatatg
cgtgatcgagaaagaggtgtggtttgggaagaaagcattctcatggctcccaagaatgct
agatttgtcttcctttctgccactgttcctaatgccaaagaatttgctgattgggttgca
aaggtccaccaacaaccatgtcacattgtttatactgattatcgaccaacacccctccaa
cactatatttttccctctggaggtgagggtttgtacctggtggtggatgaaaaggcaaaa
tttcgagaggacagctttcagaaagcggtgaatgcattagttcctaaggctgaaggtgaa
aagaaaagggagaacgggaagtggcagaaaggcttaaatgtgagcagacttggtgaagaa
agtgacatatttaaaatggtaaaaatgatcattcgccgccagtacgatcctgtcattctt
ttctcatttagcaaaagagaatgtgaatttcttgccatgcagatggcaaaaatggaccta
aatcaggatgatgagaaagctaacatagaaaccatcttttggagtgccatggacatgcta
tcagatgatgacaagaagctacctcaggtttcaaatatgttacccctcttaaaacgaggt
attggtgtgcatcattctggcttgcttcccatcctgaaggaagtgattgagattttgttt
caagaagggctgatcaagtgtttgtttgctacagagacattcagcataggtttgaacatg
cctgccaaaactgtggtatttacaaatgtccgtaaatttgatggggacaaattcaggtgg
ctatctagtggagaatatatacaaatgagtggccgggctggccgtcgaggaattgatgat
cgtggggtatgcatccttatggtggatgagaagcttgagccttcaactgctaagatgatg
cttaaaggaagtgctgatagtttgaacagtgccttccatctaagctacaacatgctttta
aatcaaatgcgctgtgaagatggcgatcttgaaaatttgctccgcaattctttctttcag
tttcaagcagacagggcccttcctgatcttgagaaacaagcaaaagtccttgaagaagag
aggaattcaatggtaattgaagaggaagaaaatctgaagaattattatgatctgatacag
cagtacaaaagtttgaagaaggatgttcgtgatattgtgttttctccaaagcactgcctg
tcctatctgcagtctggcagactagtgtgtatccagtgcacagaaagtgatgacaagtcc
ccttctttcttgattgaagacctagtcacatggggagtgatagtcaattttgatcgagtg
aaaggtgtttcagatgttgatgtagatgatgcaattagaaaaccagaaaatgcaaattac
accgtggatgttcttacaagatgtgttgtgaccaaagatggagttgccaagaaaaaaatc
aaggttgtcccattgaaagagcctggagaacctctcattgtttctattcctattgatcag
ataaatattttgagcagtgctcgcttgtatatgtcaaaggatcttttgccattagaagtt
cgagagaacaccctgaagcaggtttcagaatttctttctagaaaacctagtgggttgccc
ttggatcctgaaggagacatgaatattcaaagcagctcatacaaaaaggcagttcgtcgg
atagaggctttagagcacctgtttgaaaaacatgaaattgcaaaatctccacttatcaag
gaaaagctcaaagtcttacacacgaagcaagaattaacagccaggatcaagttaatcagg
aaatcaatgcgctcttccacatcattggcttttaaagatgaacttaaagctagaaaacga
gttcttcggaggcttgggtatatcacaagtgacgacgttgtggagttgaaggggaaagtg
gcttgtgaaattagcagtgcagatgagttgaccttgacagagctcatgttcaatggggtt
ctcaaggacataaaagtggaggaaatggtctctcttctctcatgctttgtgtggcaggaa
aaactccaagatgctgcaaaaccaagggaagaacttgacttgctttttacacaattacaa
gataccgctcgaagggttgccaaacttcagcttgaatgcaaggtacaaattgatgtggag
aattttgtgagttcatttcggcctgatatcatggaggctgtgtatgcctgggcaaaagga
tccaagttctatgagatcatggaaattactaaggtttttgagggcagcttgatcagggca
attaggagactagaggaagttcttcaacagcttatagaagctgcaaagtccattggtgag
acagagctagaggccaaatttgaagaggctgtttctaaaatcaagagagacattgttttt
gcagcatcactatacttgtag
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