Populus trichocarpa (black cottonwood): 18098637
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Entry
18098637 CDS
T01077
Name
(RefSeq) F-box/LRR-repeat protein 3 isoform X1
KO
K10268
F-box and leucine-rich repeat protein 2/20
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
18098637
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
18098637
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GFIT
Motif
Pfam:
LRR_6
LRR_4
F-box_5
LRR_At1g61320_AtMIF1
LRR_14
Motif
Other DBs
NCBI-GeneID:
18098637
NCBI-ProteinID:
XP_006382444
UniProt:
B9N4L6
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Position
5:1445318..1449085
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AA seq
646 aa
AA seq
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MSTRSTPILSVLTEDLLIRVNEKLVQDSDRKTWRLVCKELHRVDSLTRKTLRVLHVEFLL
TLLKNYTNLHTLDLSVCPRIDDWTISSLLHHVDHSIWARNLKCLNLSRANGLKFAGLEML
VGACKGLESVDVSYCCGFGDREAAAISGCGGLRELRMDKCLGVSDVGLAKIVVGCGRLER
LSLKWCMEISDLGVELLCKKCLELKFLDVSYLKVTSESLRSIASLPKLEDLAMVGCPFVN
DVGLQFLENGCPLLQKIDVARCDCVSSYGLSSLIGGHSDLLHIDAGHCFSEVSPSFVKCT
QKLKNLNTIIIDGVRGSDTIFQTISSNCKSLIEIGLSKCGGVTNMGIIQLVSGCVNLKII
NLTCCRSIADAAISAIANSCRNLLCLKLESCNMITEKSLEQLGLHCLLLEVLDLTDCCGI
NDRGLERLSRCSRLLCLKLGLCTNISDKGLFYIASNCSELHELDLYRCKNIGDGGLAALS
SGCKKLRKLNLSYCIEVTDKGMKSLGYLEELSDLELRGLDKITSVGLTALVTRCKRLTYL
DLKHCEKIDDSGFQVLAYYSRNLRQLNLSYCAITDMTLCMLMGNLTRLQDVDLVHLTNVT
VEGFELVLRACCVRIKKIKLVAALSFLLSSEVQGILHARGCKIRWD
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactcggtctacacctatactttctgtcttaacagaagatttactcattcgggtc
aatgagaaactcgttcaagactcagatcgcaagacatggaggctcgtttgcaaagaatta
catcgagttgactcactcacacgcaaaactctacgtgtccttcatgttgagttcttatta
actctcctcaagaactacaccaacctccacactctagacctctcagtctgtccacgtatc
gacgactggactatatcgtcgttactacatcatgttgatcactcgatatgggctaggaat
ttgaagtgtttgaacttgagtagggctaatgggctgaagtttgcggggttggagatgttg
gtgggtgcttgtaagggtttggagagtgttgatgtgtcgtattgttgtgggtttggtgat
agggaggcggcagcgatatcgggttgtggagggttgagggagttgaggatggataagtgt
ttaggagtcagtgatgttgggttggctaagattgttgttgggtgtggaagattggagagg
ttgagtttgaagtggtgtatggagattagtgatcttggtgttgagcttttgtgtaagaag
tgcttggagttgaagtttcttgatgtttcttatctcaaggtgacgagtgaatcgctgcgt
tctattgcttctttgccaaagctggaggatttggctatggtgggatgcccttttgtaaat
gatgttggattgcaatttcttgaaaatggatgccctttactgcagaaaattgatgttgca
aggtgtgattgtgtcagttcatatgggttaagttccttgattggaggacatagtgatctt
ctgcatattgatgcaggtcactgcttttcagaagtttctccaagctttgtcaagtgcaca
cagaaattgaagaatctgaacaccatcataattgatggggttcgaggttccgacactatt
ttccagacaatcagcagtaactgcaagtctttaattgaaattgggttgagcaaatgcgga
ggggtcactaatatgggaattattcagctggtgtctggctgtgtcaatctgaagatcatc
aatttaacatgttgccgttctatagccgatgctgcaatatctgctatagcaaactcatgt
aggaaccttctgtgcctgaagttagagtcttgcaatatgatcactgagaagagtctcgaa
cagcttggattacattgcttgctacttgaagtgcttgatctcaccgactgttgtggcata
aatgacagagggcttgaacgcctttctagatgttccaggcttttgtgtttgaaattagga
ctttgcacaaacatatcagacaaaggactcttttatattgcttctaattgttcagagctt
catgaacttgatctataccgctgtaagaatattggagatggtggtttagcagctttatca
agtggctgcaagaagttaaggaagctgaacttgtcatactgcattgaggtcactgacaaa
gggatgaagtctcttggttatttggaggaattatctgacttggagttgagggggcttgat
aaaatcacaagtgtaggtttgacagcattggttaccaggtgtaagaggctgacctattta
gacttgaaacattgcgagaaaattgatgattcagggtttcaggtacttgcctattactca
cggaacttgcgacagttaaatttgagctactgtgctatcacggacatgacattatgcatg
ctgatgggaaacttgactcgcctgcaagatgtggatttggtgcacctcacaaatgtcact
gtggaggggtttgagctcgtgcttagagcctgctgtgtcagaatcaagaagatcaagtta
gttgctgctctaagtttcttgctttcctctgaagtacaagggattttgcatgccaggggt
tgcaaaattagatgggattag
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