Populus trichocarpa (black cottonwood): 18098639
Help
Entry
18098639 CDS
T01077
Name
(RefSeq) pectinesterase-like
KO
K01051
pectinesterase [EC:
3.1.1.11
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00040
Pentose and glucuronate interconversions
pop01100
Metabolic pathways
Module
pop_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
18098639
Enzymes [BR:
pop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.1 Carboxylic-ester hydrolases
3.1.1.11 pectinesterase
18098639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectinesterase
PMEI
PPDK_N
Motif
Other DBs
NCBI-GeneID:
18098639
NCBI-ProteinID:
XP_052309273
LinkDB
All DBs
Position
5:1453586..1455554
Genome browser
AA seq
566 aa
AA seq
DB search
MASKLITLCTTSLLLLLLCSPSLANYSFSSIFNTPETICENTRFPHFCKSSLPHNKPGTI
HDYAKISFQQSLSHAQRFLWLVQHYSRLPSTLYKSTILALEDCLFLAQENIDYLSYVMET
LKSSADDALQGYQAEDLQTLLSATLTNQETCLDGLQYRSSSSSIKNALLVPISNGTMHYS
VALALFTRGWAHSTMKGRYLTERKHVFSDLEDGASKGLPLMMSSKDKQIYESVSGRRVLK
TSNLTGVLVSKVVVVDPYGSGKFRTITEAVAAAPNNTFASNGYYVIYVVAGVYKEYVSIP
KSKKYLMMIGAGINQTVITGNRSVDDGWTTFNSATFAVLGQGFVAVNITFRNTAEAIKHQ
AVAVRSGADMSTFYKCSFEGYQDTLYTHSLRQFYRDCDIYGTIDYIFGNAAVVLQNCNIY
SRLPLDNQFNTLTAQGRTDPNQNTGTSIQNCTIKAAKDLASSNSSTKTYLGRPWKEYSVT
VIMQSFIDSVIDPAGWSAWSGEFALSTLYYAEFNNTGPGSNTTNRVQWPGYHVISGTEAA
NFTVSNFIAGGFWLPGTGVPYVGGLQ
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaagctaatcaccttatgcacaacctctctccttctcctgctcttgtgttca
ccctctcttgcaaattactcgttttcatccatctttaatacaccagaaaccatttgtgag
aacacacgtttcccccatttctgcaaatcttctttaccacataataagcctggaaccata
catgactatgccaagatttcatttcaacaatctttgtcccatgctcaaaggtttctttgg
cttgttcaacattactcaaggcttccctcaacactgtacaaatccaccattcttgccctt
gaagattgcctgttcttagctcaagaaaacatagactacttgtcatacgtaatggaaact
ttaaagtctagtgctgatgatgcccttcaaggctaccaagctgaagatttacaaaccttg
cttagtgcaactttgaccaaccaggaaacctgcttggatgggcttcaatacagatcatca
tcctcaagcatcaagaatgccctattagtccctatctcgaacggaaccatgcactatagt
gttgctcttgcactttttactcgtggttgggctcatagcacaatgaaaggtagatattta
accgaaagaaagcatgtgttttctgacttggaagatggtgcaagcaaaggcttgccattg
atgatgtcaagcaaggataaacagatctacgagtcagtaagtggaagaagagtccttaaa
acatcaaaccttactggtgtcttggtgagcaaagtggtggttgtggatccatatggatcc
gggaagtttcgaaccattaccgaagctgtagctgctgcaccgaataacacctttgctagc
aatggatattatgtgatttatgtggttgccggcgtctataaagagtacgtttccatacca
aagagcaagaaatacctgatgatgatcggagcaggtattaaccagactgtgattactggc
aaccgaagtgtagatgatggatggacaacatttaattcagcaacatttgctgtgcttggt
caaggatttgttgcagtgaacataacgtttcggaacacggcagaagcaatcaagcaccaa
gctgtggcagtaagaagtggagcagatatgtccacattttacaaatgcagctttgaaggt
taccaagacaccttatacactcattctcttaggcaattctacagagattgcgacatctat
ggcacgatcgattacatattcggtaatgctgcagttgttcttcagaattgcaatatctat
tcgcgattacccttggacaaccagttcaatactctgactgctcaaggtcggactgatcct
aaccaaaacacaggcacttcaatacaaaattgtaccatcaaggcggctaaggacttggcc
tcaagtaatagttcaacaaaaacatacctaggcaggccatggaaggaatattcagtaact
gttatcatgcagtctttcatcgatagcgtaatcgatccggccggttggtccgcatggtca
ggagagtttgcacttagcacactttattatgcagaattcaataacactggtcctggatca
aatactactaacagggttcaatggcctggttatcatgtgattagtgggaccgaggcggct
aatttcaccgtgtccaacttcatagcaggaggtttctggttgccaggaacaggagtgcct
tacgttggtggtttacagtga
DBGET
integrated database retrieval system