Populus trichocarpa (black cottonwood): 18098659
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Entry
18098659 CDS
T01077
Name
(RefSeq) serine/arginine-rich splicing factor SR30 isoform X6
KO
K12890
serine/arginine-rich splicing factor 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18098659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
18098659
Spliceosome [BR:
pop03041
]
Common components
Common spliceosomal components
SR proteins
18098659
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
18098659
NCBI-ProteinID:
XP_024457867
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All DBs
Position
5:1548178..1554096
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AA seq
303 aa
AA seq
DB search
MSRASRTLYVGNLPGDIRVREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDAHDAKYA
IRGLDGYNFDGCRLRVELAHGGRRHSSPVDRYSSYSGSSGSRGPPKHSDYRVLVSGLPSS
ASWQDLKDHMRRAGDVCFSQVFRDHGGMTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAY
IRVREYDSRRSYSRSPSCSSHVSRSRSRSRSHGRSYSDRSRSKSPRAKYSRRSRSVSVSS
RSRAGSSPRALSRSRSRSRSPVDSRPRSKQDYRTPSRSPARLSQPRSPSVRSDRSRSVDS
MDR
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgagccgagcaagtcgaacactttacgttggcaatctccccggcgatattcgtgtgagg
gaagttgaagatttgttttataagtatgggcccattgttgacattgatttgaaaatccca
ccgagacctccaggctatgcatttgttgagtttgaagatgctcatgatgctaaatatgca
attcgcggtctggatggatataattttgatggttgtcgattacgagttgagcttgctcat
ggtgggcgaagacattcatcaccagtggatcgttatagcagttacagtggtagcagtggt
agccgtgggcctcccaagcactctgactatcgtgttttagtctctggattgccttcttct
gcttcatggcaagacttaaaggatcatatgcgtcgagctggggatgtctgcttttctcaa
gtctttcgcgaccatggtggcatgacaggaattgtagactacacgaactatgatgacatg
aaatatgctatcaagaagcttgatgactctgagttccggaatgcattttctcgggcatat
attcgggtgcgggagtatgattctagacggagttactctaggagccccagttgcagttca
catgtatcaagaagccggagtcgcagtcgcagtcacggtcgaagctatagtgacaggagc
cggagcaagtctccaagggcaaaatattcacggcgttctcgatctgtatctgtttcctct
cgttctcgtgcaggatcatctccacgagctttgtcgagatcccgttcaagatcaagatct
ccagttgattctcggcctcgcagcaaacaagactatagaaccccaagcagaagccccgct
cgtttatctcagccccgttcgccttctgtgagatctgatagaagtcgttcagtagactcc
atggatcgttga
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