Populus trichocarpa (black cottonwood): 18099035
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Entry
18099035 CDS
T01077
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00040
Pentose and glucuronate interconversions
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
18099035
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
18099035
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
18099035
NCBI-ProteinID:
XP_024456181
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Position
3:21316549..21318545
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AA seq
381 aa
AA seq
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MVVLRHLVVVVVSIAILSFIPSACIAANKMNAIDQCWKPSPNWRRSRQQLASCSVGFAGK
MTNNVGRDVVMYKVTDPSDDPVNPKQGTLRHGATMITGKVWITFERNMDIKLEKPLLISS
YTAIDGRGVDVGIEGFGCFLVYKATDVIIHGLRIHHCNAQGPSTVMGPDGKQMQLGQMDG
DAIRLVSASKIWIDHNTLYSCQDGLLDVTRGSTFVTVSNNWFRDQDKVMLLGHDDGFLRD
KNMKVTVAFNRFGPNCNQRMPRIRHGYAHVANNLYRGWEQYAIGGSMSPSIKSESNYFIA
PTSGKKEVTWRNGIGGKSKPWNFYSIGDLFTNGASFFQTGRRGMAKPNYNKEQSFKVGDA
KYVKALTSSAGALKCSRTSRC
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atggttgtcttaaggcaccttgtagtagtggtcgtttctattgccatcctttccttcatc
cccagtgcttgtattgctgccaacaaaatgaatgccatagatcaatgttggaaaccgagt
ccgaattggcgaagaagccggcaacaactggcatcttgttctgtagggtttgcagggaaa
atgactaacaatgttgggagagatgttgtaatgtataaagtcaccgatcctagtgatgac
cctgtgaaccccaaacaagggacgttaagacatggagccaccatgatcacaggcaaagtc
tggatcactttcgaaaggaacatggatatcaaacttgagaaacctcttcttattagcagc
tatactgccattgacggtcgcggtgttgatgttggaattgaaggcttcggatgcttcttg
gtgtacaaggcaacggacgtgatcatccatggcctaaggattcaccattgcaatgcacaa
gggcctagcacagtcatgggaccagatgggaaacaaatgcaattaggtcagatggatggg
gatgcaataaggctggtcagtgcatctaagatttggatagatcacaacacactgtattca
tgccaggatggtcttcttgatgtcactcgaggatctacatttgttactgtctctaacaat
tggtttagagaccaagacaaggtcatgctacttggccatgatgatgggttcttgagggac
aagaacatgaaggtcactgttgccttcaatcgtttcggacctaattgtaaccagagaatg
ccaaggattcgccatggatatgcacatgtagccaacaatctgtaccgaggatgggaacag
tatgcgattgggggaagcatgagtcctagcatcaagagcgaatccaactattttattgca
ccaacatcaggaaagaaggaggtaacatggagaaatgggatcggtgggaaaagcaagccc
tggaacttctactccataggggatctgtttacaaatggagcttcatttttccaaacaggt
cgcagaggtatggcaaagcctaactacaataaggagcaaagcttcaaggttggagatgcc
aagtatgtgaaggcattgacaagctctgcaggtgctttgaagtgctcaaggacatctaga
tgctga
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