Populus trichocarpa (black cottonwood): 18099113
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Entry
18099113 CDS
T01077
Name
(RefSeq) serine/arginine-rich splicing factor SR45a
KO
K12897
transformer-2 protein
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18099113
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
18099113
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
18099113
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
18099113
Spliceosome [BR:
pop03041
]
Common components
Common spliceosomal components
SR proteins
18099113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
KAR9
Motif
Other DBs
NCBI-GeneID:
18099113
NCBI-ProteinID:
XP_006383020
UniProt:
U5GH90
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All DBs
Position
5:7611995..7614807
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AA seq
236 aa
AA seq
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MADSPVKRDSRSPSPWREQSRSRSRSWSRPRPRSRSRSRSLPRPRHRSRSQSRGRSRSRD
QDRTEVVNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMD
NVDGANRCVKYLNQSVLEGRYITVEKSRRKRPRTPTPGHYLGLKNTRDYGSRGDRGGDRG
GDRGRYRGGYGRDDHRRSPRHSPYRGGRDYSPRRSPYGGRSRRDRSRSPYSPRGSR
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atggctgattctccagtcaaaagggattcacgctctccttcaccttggagagagcagtcg
aggtccaggtcaagatcgtggtcgaggcccaggcccaggtcaagatccagatcaagatca
ttgccaaggccaaggcataggtcacggtcacaaagtcgtggaagatcaaggtctagagat
caggacaggacggaagtcgtaaatcctggaaatacactttatgtgacagggctgtctaca
agggtcacagaaagggatcttgaagaacatttctcaaaggagggaaaggttgcatcttgt
tttcttgttgtggagccccggacacgcatttctcgtgggtttgcttttgttacaatggac
aatgttgacggtgccaatcgttgtgtgaaatatctcaaccagtcagttctggaggggcga
tatatcactgtggaaaagtcacggaggaaacggccaagaactccaactccaggacactat
cttgggctgaagaataccagggactatggctctcgtggtgatcgtggtggtgatcgtggt
ggtgatcgtggtaggtatcgtggtggctatggtcgtgatgaccatcgcaggtctccaagg
cactctccttatcgtggtggtcgtgattattctcccaggcgctctccctatggtggacga
tcacggagggacaggtccaggtccccttattctcctagaggctctaggtga
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