Populus trichocarpa (black cottonwood): 18099161
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Entry
18099161 CDS
T01077
Name
(RefSeq) vacuolar protein sorting-associated protein 35A
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
18099161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
18099161
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
18099161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FliS
Urb2
Motif
Other DBs
NCBI-GeneID:
18099161
NCBI-ProteinID:
XP_006383071
UniProt:
U5GBE7
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All DBs
Position
5:8040201..8047575
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AA seq
793 aa
AA seq
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MIADGVENEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKY
YELYMRAFDELRKLEMFFKEEARRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVVDAVEFVL
QNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKDTVLP
RVLEQVVNCKDEIAQFYLMDCIIQVFPDEYHLQTLEILLGACPQLQPSVDIKTVLSRLME
RLSNYAASSAEVLPEFLQVEAFSKLNNAIGKVIEAQVDMPIFGAVTLYSSLLTFTLHVHP
DRLDYADQVLGACVKKLSSKGKLDDSKATKQIVALLSAPLEKYNDIVTALKLSNYPRVME
YLDIETNKIMATVIIQSIMKNNTRISTADKVEALFELMTGLIKDLDGAEEEVDEDDFKEE
QNSVARLIQMLYNDDQEEMFQIICTVKKHIMTGGPKRLPFTVPPLVFLSLKLVRRLQGSS
QDQEENPFGDDSSTSPKKIFQLLNQTIEALSIVPAPELALRLYLQCAEAANDCDLEPVAY
EFFTQAYILYEEEVSDSKAQVTALHLIVGTLQRMHVFGVENRDTLTHKATGYSAKLLKKP
DQCRAVYGCAHLFWVDDQDNMKDGERVLICLKRALRIANAAQQMSNAARGNTGSVLLFVE
ILNKYLYFYEKGNPQITVAAIQSLIELITTEMQSDNSPPDPAADAFLASTLRYLQFQKQK
GGAISEKYEAIKV
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcagacggagtggaaaacgaagagaaatggttagcggcagggatcgctggcctt
caacaaaacgctttttacatgcatcgcgctctggattcgaataatttaagagatgctttg
aagtattcagcgcagatgttatcggagttacggacttcgaagctttctcctcataagtat
tatgaattatatatgagagcatttgatgaattgaggaagctggagatgttttttaaagaa
gaggcgcggcgtgggtgttcaattattgatttgtatgaacttgtgcagcatgctggtaac
atcttgccgagattgtatctcctatgtactgtaggatctgtatacattaaatctaaagaa
gctccagcaaaagatgttcttaaagatcttgttgaaatgtgtcgcggcattcagcatcct
gtacgtggcctcttcttaaggagttacctttctcaagtcagtagggataaattacctgat
atcggttcagagtatgaaggagatgctgacacggttgtggatgctgtggaatttgttctg
caaaatttcactgagatgaacaagctatgggtgcgaatgcaacatcagggacctgcccgg
gaaaaggagaagcgggagaaagaaaggagcgagctgcgtgatcttgttggcaagaacctg
catgtcctcagccagatagagggtgttgaccttgacatgtacaaagatactgtgcttccc
agagttcttgaacaggttgtcaattgtaaagatgaaatcgctcagttctatctgatggat
tgcataattcaagtcttccctgatgaatatcatttgcaaactcttgagatattgttgggt
gcttgcccccaacttcagccatctgttgacatcaagacagtgttatctagattgatggag
aggctatcaaattacgctgcttcaagcgcagaagttttacctgaattcttgcaagtagaa
gccttctccaaattgaacaatgccataggaaaggtgatagaagcacaagttgatatgcca
atttttggagctgtaactctatattcatctcttcttacatttacactccatgttcaccct
gaccggctggattatgctgatcaagtgctgggagcgtgtgttaagaaactatccagcaaa
ggaaagcttgacgacagcaaagccacaaaacaaattgttgctcttttgagtgctccatta
gagaaatataatgatattgtcactgcattgaagctttcaaactatcctcgtgtaatggaa
taccttgatattgagacaaataaaattatggcaactgttataattcaaagtattatgaaa
aataacacacgcatctctactgctgacaaggttgaggcgttatttgaattaatgacaggg
cttatcaaggatctggatggggctgaagaagaggttgatgaagatgatttcaaagaggag
cagaattccgttgcacgtcttattcagatgctgtacaatgacgatcaagaggaaatgttt
cagatcatatgtacggtgaagaaacatatcatgacaggaggaccaaagcgcttacccttc
acagttcccccacttgtttttttgtctctcaagttggtaaggagacttcaaggcagcagc
caagatcaggaggaaaacccttttggagacgattcatcaacttcacctaagaaaattttc
cagctcttgaatcagacaattgaggctctgtcaattgttccagcacctgaattggcatta
cgattgtacttgcagtgtgctgaggctgccaatgactgtgatctagagcctgttgcatat
gaatttttcacccaagcatatattctatacgaggaagaagtctcagattcaaaagcacag
gtgacggcactgcatttaatagtaggcacccttcagaggatgcatgtttttggtgtagag
aatagggatactttaacccacaaggccacggggtattcggctaagcttttaaagaagcct
gatcagtgtagagcggtttatgggtgtgcacatctattctgggttgacgatcaggataac
atgaaagatggagagagggttctgatttgcctgaagcgtgctttgcgaattgcaaatgct
gctcaacaaatgtccaatgcggcgcggggtaacactggatcagtgttgctctttgttgag
attctgaacaagtatctttacttctacgagaagggaaacccacaaatcacagtggctgca
atccagagcctgattgaattgattacaactgagatgcaaagtgacaacagtccaccagat
cctgctgctgatgcattcttagccagcacacttagataccttcagttccagaaacagaaa
ggtggtgcaattagtgaaaaatacgaggccatcaaggtgtga
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