KEGG   Populus trichocarpa (black cottonwood): 18099200
Entry
18099200          CDS       T01077                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    18099200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    18099200
   03036 Chromosome and associated proteins [BR:pop03036]
    18099200
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     18099200
Chromosome and associated proteins [BR:pop03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     18099200
    COMPASS/SET1 complex (yeast)
     18099200
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_SPT8 Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_Vps41 Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_WDR75_1st KNTC1_N Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N Cytochrom_D1
Other DBs
NCBI-GeneID: 18099200
NCBI-ProteinID: XP_024456483
LinkDB
Position
5:8357732..8361844
AA seq 332 aa
MVGTQQEREEKVSLELTEEILQSMETGMVFRDYNGRISSMDFHKTSSYLVTASDDESIRL
YDVAGAACLKAINSKKYGVDLVCFTSDPTTVLYSSKNGWDESLRLLSLNDNKYLRYFKGH
HDRVVSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGIVFAIAF
GGYIRMFDSRKYEKGPFDIFSVGGDVSDANAVKFSNDGRLMLLTTMDGHIHVLDSFRGTL
LSTYNVKPVSINSTLEASFSPEGKFVVSGSGDGRVHAWSVRSGKEVASWVTYETEPHVIK
WAPGSLMFATGSSELSFWIPDLSKLAAYVGRK
NT seq 999 nt   +upstreamnt  +downstreamnt
atggttgggacgcaacaagagagagaagagaaagtatcattagaactaacagaagaaatt
cttcaaagcatggaaactggcatggtttttagagattataacggaagaattagttccatg
gattttcataagacatcaagttatctagtaactgctagtgacgatgaatctattcgactt
tatgatgttgccggcgccgcatgcttgaaggcaattaatagcaaaaagtatggggttgat
ctggtttgcttcacatctgatcctacaactgttttatactcctcaaaaaatggatgggat
gaatctctgcgacttctctcgttgaacgataacaagtatttgcggtattttaagggtcac
catgacagggttgtctcgctaagtttgtgctctcgcaaagaatgctttatctccggttct
ctcgatcgaactgttttgctttgggatcaacgagctgaaaagtgccagggtcttttacgt
gtacaaggaaggcctgctgcagcatatgatgatcaagggatagtctttgcaattgcattt
ggaggatacattagaatgtttgattctcgcaagtatgaaaagggtccttttgacatcttt
tctgttggaggagatgtatctgatgcaaatgcggtaaagttcagcaatgatggaagacta
atgctcttgactaccatggatgggcatattcatgtacttgattcattccgtggaacactt
ttatctacatacaatgtgaaaccagtttcaatcaattccacattagaggcatctttcagt
cctgaaggaaagttcgttgtatcaggttcaggtgatggccgagtgcatgcttggagtgta
aggagtgggaaagaagttgcgagttgggtgacatatgaaactgagcctcatgtcataaaa
tgggcacctggaagtcttatgtttgctactgggtcttctgagctatcattttggattcca
gacttgtctaaattagcagcttatgttggaaggaagtag

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