Populus trichocarpa (black cottonwood): 18099260
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Entry
18099260 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18099260
KO
K10756
replication factor C subunit 3/5
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03410
Base excision repair
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18099260
03410 Base excision repair
18099260
03420 Nucleotide excision repair
18099260
03430 Mismatch repair
18099260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
18099260
03036 Chromosome and associated proteins [BR:
pop03036
]
18099260
03400 DNA repair and recombination proteins [BR:
pop03400
]
18099260
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
18099260
DNA Replication Termination Factors
ELG1-RFC complex
18099260
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
18099260
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
18099260
Check point factors
HRAD17(Rad24)-RFC complex
18099260
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA_lid_RFC1
TIP49
RuvB_N
Rad17
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
18099260
NCBI-ProteinID:
XP_052308823
LinkDB
All DBs
Position
5:complement(8968795..>8973142)
Genome browser
AA seq
830 aa
AA seq
DB search
ILTRILGSMENGSTRYRAPHPQLVNVLKQRRSGYEPSDTETDWQDSPMRDRNNKNGAFGS
GSPIQLDLPRNISPLKNSRRHSSRYDDYSTKDSVSSPPRRRRSSKSPYKTQRDDDGAEPM
PNQRNANPMLRTDSGRQVPPFKEQRDEGGAVSPESSQRNVSPLTKPDQRRQASPYKVKRE
DRGAVSPKFSKRNVSPLSKPEQGRQISPYKPQRKNQRTPTREERSTHSQFDEDSRLSERL
NASRRKTTAPRQRTWGKEQENSHGHKEQKGGRSPSPLSRSMIRRQREREVSHTKAPSVGE
LNEIVANIKLSKGSMLNATNFGSTESIPPGDIFFSVDQTALAMQKNAIVKDNNVTNLYPR
PTMFPHMDSALLQRNKANANINHNSRRTSTTTSGSRMTMTSASSASRRSSSKLTSDDSKM
SDARGRTSGSLKKFTANRKKKQSEAWFSCVRKGPCKTSKSPEKKRFDETSFIEKAFVVES
LRQFWADKHQPDSFNGFTCHKHEAQILSQLVSHDSIPHILLKGPPGSGKKALALALIGEI
FGDACWNEQRAAAQVAISIASSAHHVEINVNSEPNAKYALMGLVKEISNTYAINPEVSEA
NFKPDYKVLILYEVDKAPENIQHLIKWIMDCYTDSCKLILCCEDDSDILETVKNSCKVLK
VDAPVTHEIMEVLIQIARKEEFDLPMNFASKIAAKSKQNLRKAIMALEACKAHNYPFSDD
QPIPFGWEEVLVELATEILNDPSPNKLFSVRGKFQKLLVDFVHPKLILLKLVELFLKGVE
ANSKRELYYWHAYYDKRLPTGTTALLKLEEFVAKFISMYRKSSGNSQYVQ
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
attcttactcgaatactgggctcaatggagaatggttcgactcgatatagagcccctcat
cctcaacttgttaatgtcctgaagcaaaggcgaagcggttacgagccatcagatacagaa
actgattggcaagacagtccaatgcgtgatcgaaataacaaaaatggagcttttggttct
gggagtccaattcagttggatttaccaagaaacatcagccctttgaagaacagcaggaga
cattcttcaagatatgatgattattctacaaaggactctgtttccagtccgcctcgaagg
aggcgcagcagcaagtcaccctacaagacacaaagagacgatgatggcgctgaacctatg
ccaaatcagagaaatgccaatcccatgttgagaactgattccggaagacaagttcccccc
tttaaggaacagagagatgagggtggtgctgtttcaccagaatccagccagagaaatgtt
agtcccttgacaaaaccagaccagagaagacaagcttctccgtacaaggtgaaaagagag
gatcgtggtgctgtttcacccaaattcagtaagagaaatgttagtcccttgtcaaaacca
gaacagggaagacaaatttctccttataaaccccagaggaaaaatcaaagaacgcctact
agagaagaaaggagcactcactcgcaatttgacgaagacagtagattaagtgagagacta
aacgctagtcgtaggaagacaactgcaccaagacaaaggacctggggcaaggaacaggaa
aacagccatggtcataaagagcaaaaagggggaagaagcccatcgcctttgtcaaggagt
atgatccgtagacaaagggaaagggaagtttctcatacaaaagcaccttctgttggtgaa
ctgaatgagatagttgctaacatcaagctttctaaaggttctatgcttaatgctacgaat
tttggaagcacggaatctattccacctggtgatatcttcttttctgtcgaccagacagcc
ttggcgatgcagaagaatgccatagtaaaggacaacaatgtaaccaatttgtacccaagg
cccacaatgtttccccacatggattctgctcttcttcagcgtaataaagcaaatgctaat
atcaatcataactcacggagaacttcgacaacaacttctggttcacgaatgactatgact
tccgcctcttcagcaagtaggcggagtagtagcaagcttaccagtgacgatagtaagatg
agtgatgcaagaggtagaacaagtggaagcttgaaaaagttcacagcaaatagaaagaag
aagcaatcagaagcttggttttcatgtgtgaggaaggggccgtgcaagacctcaaaatca
cctgaaaaaaaacgttttgatgaaacatcattcattgagaaggcgtttgtggttgagagc
ttgagacagttttgggccgataagcatcaacctgattcatttaacggatttacatgccac
aaacatgaagctcaaattctcagtcaactagtatcacatgacagcattcctcacattttg
ttgaaaggaccacccggttctggtaaaaaagcgctagcactggctctgattggcgaaata
tttggtgatgcatgttggaatgaacaaagggcagcagcacaagtagcaatttcaatagca
tccagtgctcaccatgtagagatcaatgtaaattcggaaccaaatgctaaatatgcatta
atgggtttagtgaaggaaataagcaacacttatgctattaaccctgaagttagcgaggcc
aattttaagccagactataaagtattaattctttatgaggttgacaaagcaccagagaac
atacagcatttgataaaatggatcatggactgttacacagattcttgtaagctcatactc
tgctgtgaagatgattcagacatcctagaaaccgtaaaaaatagctgcaaagtcttaaaa
gtcgatgctcctgtaacccacgagatcatggaagttctcatccaaattgcaaggaaagaa
gagtttgatctaccgatgaactttgcttctaagatcgctgccaaatcgaagcagaacctg
agaaaagcaatcatggctcttgaagcctgcaaagcacacaactatcctttttctgatgat
cagccaattccatttggatgggaagaggttttggttgaacttgcaacagaaatcctgaat
gatccctcacctaataagctattttctgtacggggaaagtttcaaaagcttctcgtggat
tttgttcaccccaaactcattctcctgaaattggtagagctattcttgaagggagtggag
gctaattcaaaacgggagctttattattggcatgcttattatgataagaggctccctaca
ggaacaactgctctgctcaaactggaagaatttgtggccaaattcattagcatgtacagg
aagagctctggcaatagtcagtacgtgcagtga
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