Populus trichocarpa (black cottonwood): 18099289
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Entry
18099289 CDS
T01077
Name
(RefSeq) U1 small nuclear ribonucleoprotein 70 kDa
KO
K11093
U1 small nuclear ribonucleoprotein 70kDa
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18099289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
18099289
Spliceosome [BR:
pop03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
18099289
Complex B
18099289
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GFIT
Motif
Pfam:
U1snRNP70_N
RRM_1
Motif
Other DBs
NCBI-GeneID:
18099289
NCBI-ProteinID:
XP_006383218
UniProt:
U5GC46
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Position
5:complement(9253354..9258356)
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AA seq
481 aa
AA seq
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MGDDNDAFMRNQNAAVRGTTKGQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRLPLEFKP
PPEKRKCPPYSGMAQFVSNFAEPGDLEYAPPIKEAETRSQRKARIHMARLEKGAEKAAEE
LQKYDPNNDPKVSGDPYKTLFVARLNYETTESKIKRELESYGPIKQVCMVADKVSNKPRG
YAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEE
VNQRHPGREVQQSGGLSRSEEPRTREDRHTEREREVSRDRGRDRDKEREREKSHERSHDR
PRDRDHREDRHNRDRERERDRGRDRDRTRDRGRDRGRDYERDRERDHGRDRARDRERDYE
VGDHYHGRSHDRDESKHERDRHGERDNDHAEPEDDMGWYEQPEQGQKLPDAEDDQHYDHY
EHRRSRGRYDHMDVQGDHGRSDLYHGTDRDGDHMEEDDYHYDRGTSESRENRRLERSPSQ
D
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgacaacgatgccttcatgcgcaaccaaaacgccgctgtacgcggcacgacg
aaaggacagaaccgcgccaacgttctccagctcaaactgattggtcaaagtcatccgacg
ggattaacaacaaatctcttgaagctttttgagccccgacttcctctggagtttaaaccc
ccgccggagaagagaaaatgcccaccttattcaggaatggctcagtttgtgagtaacttt
gcagagcctggtgatctggagtatgctccgcctatcaaagaggctgaaactcgttcacaa
agaaaggctagaattcacatggcacgactagagaagggtgcagaaaaagctgcagaggag
ctccaaaaatatgatcctaataatgatccaaaagtttcaggagatccttacaagacacta
ttcgttgctaggcttaattatgagaccaccgagagtaaaattaaaagggagcttgagtct
tatggaccaataaaacaggtttgcatggtagctgataaagtgtcaaataaacctaggggc
tatgctttcattgaatacatgcatacacgagacatgaaagctgcgtataagcaagctgat
gggcggaagcttgatggcagaagggtactagtggatgttgaacggggtaggactgtacca
aattggcgacctcgcagactaggtggtggacttggaactaccagagttgggggtgaagaa
gttaatcagaggcatcctgggagagaggttcagcaatcaggaggattgtctcggtctgag
gagccaaggacacgagaagatcggcacactgaacgggagagggaggtgtctcgtgacagg
ggaagggacagggacaaagaaagagaaagggagaagtcacatgagcgctcccatgacagg
ccaagggatcgtgaccacagagaagataggcataacagagatcgtgaaagagagagagac
cgaggccgtgaccgtgatagaacacgtgatcgaggtcgggaccgtggccgtgactatgag
cgtgatcgagagagagaccatggtcgtgatcgtgctcgggacagggagagggactatgaa
gtcggtgaccattaccatgggcgttctcatgatcgggatgaatcgaaacatgagagggat
cgacatggtgaaagggacaatgatcatgctgagccagaggatgatatgggctggtatgaa
caacctgagcagggtcaaaagctgccagatgcagaagatgaccagcattatgatcactac
gagcatcgcagaagcaggggacggtatgatcacatggatgttcaaggtgatcatggccgc
agtgatctatatcatggcacggatcgcgatggcgatcatatggaggaggatgattaccac
tatgatcgtggaacatctgagtcacgtgaaaatcgaaggttagagaggtcgccttcccag
gattag
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