Populus trichocarpa (black cottonwood): 18099412
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Entry
18099412 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase SINA-like 10
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
18099412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
18099412
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18099412
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
18099412
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Motif
Pfam:
Sina_ZnF
Sina_RING
Raftlin
TPR_TTI1_C
Motif
Other DBs
NCBI-GeneID:
18099412
NCBI-ProteinID:
XP_024444360
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All DBs
Position
17:12776212..12778906
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AA seq
405 aa
AA seq
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MVKFPEENEDGPSNPSRKRQRVSSTSGGFSAATPNQETQQHLENENQEATQQHQENENRE
TTHQHQSNENEETQQHESNEENEGTHQHQANENEETQQHQENENQESSEEEDEYLSDGGA
EAEQEDDVLDKLSSFLGDGAMSMTLMDLDILDCAICLYPLTIPVFQCENGHTACSSCCSK
LAHKCPACSFPIGNNRCRAIEKVLESVRIPCENMRYGCGGTFIYSEKYNHDKSCIYAPCS
CPIQGCNFISSSKKLDPHLRCRHVGDVIRFYYGGAFPLPLTVGQNSVVLQETDDGAIFIL
HHHEETFGNIVTISCLGPPTSAGEHFYELSTNEYFYDLSKKSQGKSFKFQSYMQSIQSRV
DHPLSAGLVLPPGQFFGTSKMIYLDLIIWRKGDCPLNIQSSTNAN
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggttaagttccctgaagaaaatgaagatggacccagcaatccatctcgcaagagacaa
agggtttcttcaacttccggtggtttttctgctgctactccaaaccaagagacccaacag
catctagagaatgaaaatcaagaagcaacccaacagcaccaagagaatgaaaatcgagag
acaacccatcagcatcaatcaaatgaaaatgaagagacccaacagcatgaatcaaatgaa
gaaaatgaagggacccatcagcatcaagcaaatgaaaatgaagaaacccaacagcatcaa
gaaaatgaaaatcaagaatcttctgaagaagaggacgagtatcttagtgatggtggggcg
gaagctgaacaagaggatgacgtactcgataaattaagcagttttcttggcgatggtgcc
atgtcaatgaccctcatggacctagatattcttgattgcgcaatctgcttatatcccttg
actatccctgtctttcagtgtgagaatgggcacacagcttgctcttcctgctgcagtaaa
cttgcacataaatgtcctgcctgctcgtttcctatcggcaataatcgctgtcgggctatc
gagaaggttcttgaatcagtaaggataccatgcgaaaatatgcggtatgggtgtggaggg
acatttatttacagcgagaagtacaatcatgataagagttgcatctatgcaccatgctcc
tgcccaatacaaggttgcaacttcatcagctcttctaagaagttagacccgcatttgcgt
tgcaggcatgtaggtgatgtgatacgcttttactatggtggggcattccctcttccctta
actgttggtcaaaattctgtggttctccaagaaactgacgatggtgctatatttattctt
catcatcatgaagaaacctttgggaatattgtcacaattagttgcttagggccgcccaca
tctgcaggagaacacttctacgaactttcaacaaatgaatacttctatgatctttcaaaa
aaatctcagggaaagagtttcaaatttcagtcttatatgcagagtattcagagcagggtt
gatcaccctctctcggcggggctcgttctacctccaggtcagttttttggtacatctaag
atgatataccttgatctcatcatatggcgtaagggtgactgccctttaaacatccaaagc
agtacaaatgccaattaa
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