Populus trichocarpa (black cottonwood): 18099498
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Entry
18099498 CDS
T01077
Name
(RefSeq) RNA-binding KH domain-containing protein RCF3 isoform X1
KO
K21444
poly(rC)-binding protein 3/4
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18099498
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
18099498
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Ortholog
Paralog
GFIT
Motif
Pfam:
KH_1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
KH_NusA_2nd
KH_PNO1_2nd
Motif
Other DBs
NCBI-GeneID:
18099498
NCBI-ProteinID:
XP_006383459
LinkDB
All DBs
Position
17:complement(12186419..12194978)
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AA seq
730 aa
AA seq
DB search
MDGNRRKYFKKPGNNLFKRKGVSSSRKGKWSDSHGEECSGDGDTVYRILCPSRKIGGVIG
KGGNIVKALREETQSKITVADSVQGSDERVIIIYSSSDKPPRKMDGDEGLPAGNGQQEAF
EPHCAAQDALLKVHDRIVEEDLFGGMASDDDNDNNVVTARLLVPNNMVGCVLGKRGDVIQ
RLRSETGANIRVLPADHLPSCAMDTDELVQISGKPAVAKRALYEISILLHQNPRKDKLPS
VPMPYGGRTFHPPSDSMANMLPPGNPMWPHRNSTPHSMPWMGEYGNHPSEFGPGGFNGVP
PGHGREPSAEFSMKILCSTGKIGGVIGKGGSNVKIVQQETGASIHVEDASAESEERAIRV
SAFEGLWNPRSQTIDAILQLQDKTSDFSEKGMIITRLLVPSSKVGCILGQGGQVINEMRR
RLQADIRVYPKNDKPKCASDDEELVQISGNYGVAKDALAEIASRLRARTLRDANAGTEPG
PAGPVPGFGPARNLPGRGPQPSGMMAASSSGGYEPLRGGRRDHEPQSYSVPPAAMGYPSM
NRVLEADNSRSMNRVLEANNSLNGMNSVMRSGGRDVSITDEFAGRRAKLQDPHYGSSEVE
NHGSSEHLIAGQGFYQGFMASGGQNMSAHQGSYQNNVTAQQSMNPQRDTYQAMSAQQDPY
QSISAQQSTYQNMNAQQNTYQNMNAQPSPHQNMRAHQSPYSMTAQQGVYTNINAPPSSYN
NSAQQGTYQY
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggatgggaataggcggaaatatttcaagaaaccgggaaacaatctttttaaacggaaa
ggagtgagcagtagtaggaaaggaaaatggagcgactctcacggcgaagaatgttcaggt
gatggtgatactgtttataggatactctgtccttcgagaaaaattgggggtgttattgga
aagggtgggaatatagtgaaagctctaagagaagagacgcaatcgaaaattacagtggct
gattctgttcagggttcggatgagagagtgattattatttatagttcttctgataagcct
ccgaggaaaatggatggcgatgaaggtttgcctgcggggaatggacagcaggaggccttt
gagccacattgtgctgcccaggatgcgcttttgaaagttcatgaccggattgttgaggag
gatctttttggtgggatggcgtcggatgatgataatgacaacaatgttgtcaccgcgaga
cttcttgttccaaacaacatggtaggttgtgttttgggaaaacggggagatgttattcag
agattaagaagtgagactggtgcgaacatacgtgttcttcctgctgatcatctcccttca
tgtgctatggatactgatgaattggtccagatctctggaaaaccagctgtggcaaagagg
gctctttatgaaatatccattctattgcatcagaatccgcgcaaggacaaactgccaagt
gttcctatgccttatggtggtcgaacttttcatcctcctagtgattccatggcaaacatg
cttccaccaggaaatccaatgtggcctcatcgtaactccactccccacagtatgccatgg
atgggggaatatgggaatcacccttcagaatttgggccaggtggtttcaatggtgttcct
cctggacatggcagggagccttcagctgagttctcaatgaaaattttgtgctctactggg
aagattggtggggtaattgggaaaggaggctctaatgttaagattgtacagcaggagaca
ggagctagtattcatgttgaggatgcttcagcggagtcagaagaacgtgcaattcgtgtc
tctgcttttgagggtctctggaatccgagatcccaaaccattgatgcaattcttcagctt
caggataaaacaagtgacttttctgaaaaaggtatgataattactagacttctggttcct
tcaagtaaggttggctgcatccttggacaaggaggtcaggttatcaatgaaatgagaagg
agattgcaggcagacattcgtgtttaccccaaaaatgataagcctaaatgtgcatctgat
gatgaagagcttgtacagatatctggaaattatggtgttgctaaagatgctttggcagag
attgcatccagactcagagcaagaactttgcgtgatgcaaatgctggaacagaacctggg
cctgctggacctgtcccaggctttgggccggcacgaaacttaccaggaagaggaccccaa
ccatctggtatgatggcagctagcagctctggtggatatgaaccgctcaggggtggaaga
cgtgatcatgagcctcagagctattcagttcctccagctgctatgggatacccaagtatg
aaccgtgttttggaggctgataactctcgtagtatgaaccgtgttttggaggccaataac
tcacttaatggaatgaattctgttatgcgatctggagggcgtgatgtttcaattactgat
gagtttgctgggagaagggcaaagcttcaagatcctcattatggtagttctgaagttgag
aatcatggatcttccgagcatttgattgctggacaaggtttttatcaaggcttcatggcc
tctggtggacagaacatgagtgcccaccagggttcctaccaaaacaatgtaacagcccag
caaagcatgaatcctcagcgagatacctaccaagccatgagtgctcagcaggacccttac
caaagcatcagtgctcagcagagcacctaccaaaacatgaatgctcagcaaaacacctat
caaaacatgaatgctcagccgagcccgcaccaaaatatgagggcacaccaaagcccctac
tccatgaccgctcagcaaggtgtctacacaaatatcaatgctccaccaagctcctacaac
aacagtgctcagcaaggcacttaccagtattga
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