Populus trichocarpa (black cottonwood): 18099724
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Entry
18099724 CDS
T01077
Name
(RefSeq) mechanosensitive ion channel protein 3, chloroplastic isoform X1
KO
K22047
mechanosensitive ion channel protein 1/2/3
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pop02000
]
18099724
Transporters [BR:
pop02000
]
Other transporters
Pores ion channels [TC:
1
]
18099724
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
MSL2_3
Msl2-3_C
MS_channel_2nd
MS_channel_3rd
Rv2949c-like
Motif
Other DBs
NCBI-GeneID:
18099724
NCBI-ProteinID:
XP_024457717
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Position
5:13881910..13894065
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AA seq
720 aa
AA seq
DB search
MIRVSSIQFSHELRVHNSHGCSNQHNSAIRKSRVQLINVNLSSQFLRQDPWSLHLQNCIN
RSLSPVPSRCIVFLCRSVLTPGEGNGIPVLKSAAMALTRSYDALCGTTLVLKLIPAVCII
AFAAWGLDPLMCLGRAVFLHTLLSGNFLQKSDSSWKKSRTYLVMTSYLQPLLLWTGAMLI
CRALDVVVLPSEASQAVKLRLLNFVRSLSTVMAFAYCLSSLIQQAQKFFTETNDSSDARN
MGFSFAGKAVYSAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVM
IHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFNVSVVRNL
SQKTHWRIKTHFAISHLDVIKINNIVADMRKVLAKNPQIEQQRLHRRVFLDNINPENQAL
MILVSCFVKTSHFEEYLCVKEAVLLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFS
DSIFTRSGATASRPLLLIEPFYKINGEDKVKASHRPLHANEEKDAKVEAALVSEFKADTK
AGSTPIVDSKREKVITKSTSNSSTNSRVSAVLASDPQLISSMPDNSVQNNSGAQQSNGSM
GDGWKETMGQNSEGTTSKGATPERSSVAADPESGIERTESPVISQVKQDIERSVASPSVT
RPSLEENLVLGVALEGSKRTLPIEEEMDPSPFPIESKELAACRNGGAPPGKDKKDSQDNS
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgattcgtgttagttctatacaattttctcatgagttaagggttcacaatagtcatgga
tgcagtaatcaacacaatagtgcaatcagaaagagcagagtgcagttgattaatgtcaat
ctttcttctcaatttctgcgacaggatccttggagtctccatcttcaaaactgcataaat
aggtcacttagtcctgtaccttccagatgtattgtgttcctttgccgatctgttctaaca
ccaggtgaaggaaatgggattcctgttctgaaatctgcagccatggccttgacaaggtcc
tatgatgctctttgtggaactactctggtgcttaaattgattccggcagtttgtatcatt
gcttttgctgcatggggtcttgaccctctaatgtgtttggggagggctgtatttctccat
actctcctttctggcaatttcctgcagaaatctgatagtagttggaagaagagtagaacg
tatttggtcatgacttcttatcttcaacctttgctgctctggactggagcaatgctcatc
tgcagagctctagatgtagtagttctaccatcagaagcaagccaagctgtgaaactacga
cttctaaattttgtacgttcgttatcaaccgttatggcatttgcttattgtttgtccagc
ttgattcaacaggcacaaaaattcttcacagagacaaatgactccagtgatgctagaaat
atgggctttagttttgctggaaaagctgtttattctgcagtctggattgctgctgtgtca
ctgttcatggaattgctaggcttctctacacaaaagtggctaacagctggaggccttggt
acagtgttgctcacccttgctggccgagagatatttacaaatttcctttcaagtgtaatg
atccatgcaacacggccatttgttttgaatgaatggattcagacaaaaattgaaggctat
gaagtttctggtactgttgagcatgtgggctggtggtctccaacaattataagaggtgat
gatcgcgaagctgttcacattccaaaccacaagttcaatgtgagtgttgtgagaaatctt
agccagaagactcattggcgcatcaagacccactttgccatcagtcacttggatgtcatt
aaaattaataatattgtagctgatatgcgtaaagttttggcaaaaaatccacaaattgag
cagcaaaggttgcacagaagagttttcctggataatatcaatccagagaatcaggctctt
atgattttggtatcatgctttgtgaaaacctcacattttgaagagtacttatgcgtaaag
gaagcagtactcttggatcttcttagagtaattagccatcatcgtgctcggcttgccaca
cccattcgtacagtacagaaaatatacggcgaggctgatttggagaatgtgccattttcc
gactctattttcacacgttctggagctaccgctagccgtccattattgttaattgagccc
ttttataaaattaatggcgaagataaagttaaagcttcacatcgtccacttcatgctaat
gaggaaaaagatgcaaaggttgaagcagctctggtatctgaattcaaagcagataccaag
gcaggatcaacgccaattgttgactcgaaaagagagaaggtgatcacaaaatctacttcc
aactccagcacaaattctagagtctcagctgtcttggcatccgatcctcaacttatcagt
tcaatgcctgataattcagttcaaaacaattctggagcacagcagtctaatggaagtatg
ggagatggatggaaggagacaatggggcaaaattctgaaggcacaacctccaagggagca
acacctgagaggtcttcagttgctgctgacccagaatctggaattgaaagaactgagagt
cctgtcatttcacaggtcaagcaagatattgagagatctgttgcatcaccatcagtgacc
aggccttctttggaggagaaccttgttctcggtgttgctctggagggctcaaaacgaact
cttccaattgaggaagaaatggatccatctcctttccctatagaatcgaaggaattggct
gcctgccgaaatggaggagctcctcctggcaaggataaaaaggacagccaggacaattcc
tag
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