Populus trichocarpa (black cottonwood): 18099924
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Entry
18099924 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18099924
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18099924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18099924
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18099924
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_MalT
TPR_10
TPR_19
ARM_TT21
HEAT_Nup120
Motif
Other DBs
NCBI-GeneID:
18099924
NCBI-ProteinID:
XP_006381110
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Position
6:complement(4703497..4712417)
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AA seq
862 aa
AA seq
DB search
MDARDSTSNRDVSSSGGSGTTTGGGGGEEDPILSVTAALAKDAWLHFNSRRFNECLEVLY
QLKQKKEDDPKVLHNIAIAEYCRDGYPDPKKLLEVLNNIERKSKELAHTSGEQVETVSNL
GNKGISGSKGSGAMTLQASATNSTSVVYMDEFDPTVARLNIAIIWYHLHEYSKALSVLEP
LYHNIEPIEERTALHVCLLLLDVALACQDASKSADVLLYLEKAFGFGCVGQSENGNTAQQ
QSASLVAKSLSVPSSSSGMDANSDLASSENALEKSLSRTLSLSDETLEYESMFSLDISGQ
DLARPAGLSFSTDLSRTPIDRSFSPSEMKLKLHLYKVQFLLLTRNLKQAKREVKLAINIA
RVRDSPMALLLKSQLEYARSNHRKAIKLLMAASNRTEMGISSMFNNLGCIYYQLGKYHTA
SVLFSKALSSSSSLQKDKPWKLLTFLQDKSLLIVYNCGVQHLACGKPLLAARCFEKASLV
FYNRPLLWLRLAECCLVALERGLLKASRVLSDKSDVTVHVFGKGKWRHLAIENGISRNGY
VDSAEKEDMFLGSDGQLKLSVPLARQCLLNALHLLDYSGLNHLKPGLPSNLSLDENEMSE
AGSMKSSNHKNLTGSDSKTSTGGLGQVNANGDAKEQKGGTSQESMQNSISFHEDIRRREN
QLLKQALLANLAYVELELENPEKALSTARSLLELPVCSRIYIFLGHLYAAEALCMLNKPK
EAAEHLSIYLSGGNNVELPFSQEDFEQWRVEKAFDYEEMNGGSVATKNSSPEESQGIVFL
NPEEARGTLYTNFAVLCAAQGDLERAHHFVTQALSLVPNHPQATLTAVYVDLMLCNSQAA
IGKLKQCSRVRFLPSGVQLSKC
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggacgcacgagattcgacatcgaaccgagacgtctcatcgagcggcggcagcggcacc
accaccggcggtggaggaggagaagaggaccctatcctttccgtcactgccgcgcttgcc
aaagacgcttggttacactttaactctcgccggttcaatgagtgcctcgaggttttgtat
cagctaaagcagaaaaaggaagacgatccaaaggtacttcataatattgctattgcggag
tattgtagagatggttatccagatccgaagaagttgcttgaagtgcttaataacattgag
aggaaaagcaaagagcttgctcacacttcaggagagcaggtggagactgttagcaatctt
gggaataaaggtatttcagggtctaaaggaagtggtgcaatgacactccaagcatcggcg
acaaacagcacatctgttgtttacatggatgaatttgatcctacagtagcaaggctaaat
attgcgattatttggtatcatcttcacgaatattcaaaggcattatcagttctagaacct
ttgtatcacaatattgaacctatagaggagagaactgctcttcatgtttgccttctgttg
ctagatgttgctcttgcctgccaggatgcatctaaatctgctgatgttttattatatcta
gaaaaagcttttggctttggttgtgtgggtcaaagtgagaatgggaacacagcacagcaa
caatctgcaagtcttgttgcaaaatctctgtctgttcctagcagttcatcagggatggat
gctaattcagatttagcttctagtgagaatgctttggaaaagtctttatcgagaactcta
tctttatcagatgagacacttgagtatgaatcgatgttctcactagacataagtgggcaa
gacttagcaaggcctgcgggtctttcattttcaactgatctttcaaggaccccgattgat
aggtccttttctccttccgaaatgaagcttaagttgcatctttacaaggttcaatttcta
cttctcaccaggaatttgaaacaagcaaagcgtgaagtcaagcttgctatcaacattgca
cgtgtaagggactcgccaatggctctcctcttgaaatctcagcttgaatatgctcgtagt
aaccaccgtaaggccatcaagttgttaatggcagcaagtaatcggacggagatggggatt
tctagcatgttcaacaaccttgggtgcatctactatcagcttgggaaataccatacagca
tctgtgctcttttccaaggcactgagtagtagttcatctcttcagaaggacaagccgtgg
aagttgttaactttcttacaggacaaatctctcctcattgtatataattgtggagtgcag
cacttggcttgtgggaaacccttactggctgctcgctgttttgaaaaggcaagtttagtt
ttctacaaccggcctttattgtggctccgacttgctgaatgctgtctggtggctttggag
aggggtcttctaaaagctagtcgagttctatcggacaagtcagatgttacagttcatgtt
tttggaaagggaaagtggaggcatcttgcaattgaaaatgggatttcaagaaacgggtat
gtggattctgctgaaaaggaagatatgtttttgggtagtgacggccaactgaaactctct
gttccccttgctcggcagtgtctcctcaatgctctgcatttgctggattactctggatta
aatcatttgaagcctggcttgccttctaatttatccttggatgaaaatgaaatgagcgaa
gcaggatctatgaagagttcaaaccacaagaatttaactggctctgattccaaaacatca
actggaggcctgggtcaggttaatgcaaatggggatgcaaaagaacagaagggtgggaca
agtcaggagagcatgcagaactctatctctttccatgaagatattcgcaggagagaaaat
cagttgctcaagcaagcacttctcgctaacttggcatatgtagagttggaattggaaaat
cctgagaaggccttgtcaactgcaaggtctcttctggaacttccagtatgttcgagaatt
tatatttttctgggtcatttgtatgcagctgaggccctctgcatgctgaacaagcccaag
gaagctgctgagcatttgtcaatttatttgtccggaggaaataatgtggagttgcctttt
agccaggaagacttcgagcaatggagagtggaaaaagcttttgattatgaagagatgaat
ggaggatcagttgctacgaagaattcttccccagaagaatcacaaggtattgtgttcctc
aatccagaagaggcacgtggaaccctttacacaaattttgcagtcctgtgtgcagcacag
ggtgatcttgagcgggcccaccattttgtgacacaagcattatcccttgtgcctaatcat
ccacaagccactctgacggcagtttatgttgatcttatgctctgtaactcacaagcagcg
atcggcaagttaaaacaatgtagccgagtgagattcctcccgagcggtgtacaattgagt
aagtgttga
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