KEGG   Populus trichocarpa (black cottonwood): 18100026
Entry
18100026          CDS       T01077                                 
Name
(RefSeq) uncharacterized protein LOC18100026 isoform X1
  KO
K28516  E3 ubiquitin-protein ligase RNFT2
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    18100026
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    18100026
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4_3 zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX zf-rbx1 zf-RING_5 Prok-RING_4 zf-RING_6 zf-C3HC4_4 zf-RING_16 zf-ANAPC11 zf-RING_10 DUF1451 Sina_RING zf-Nse
Other DBs
NCBI-GeneID: 18100026
NCBI-ProteinID: XP_024459987
LinkDB
Position
6:8679619..8687137
AA seq 495 aa
MVRARASSTADTIMEGSGNISDPYRGRGGGNSNSSNNSSPSSSRRYGMLSASSILQAPIS
LLLEYSGLLRTTRSSHQETESLIPGGGGLGSTRLDGSSAAVVSNNGEVAIRIIGSGEHEH
DRDSSGGLVVGQVGGGQNEVLGQQQTMGADVLQGDLRSDHEGGGGDATGGAGSHQSSSVG
GDGEAADGAGGNGRDSTYQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGLAGFFVTIW
IAVVMFKSNDILRKQTALKGERKVSMLVGISLAFAIHVVGVYWWYQNDDLLYPLIMLPPK
SIPPFWHAIFIIMVNDTLVRQAAMVFKCILLISYKNSRGRNYRKQGQMLTLVEYLMLLYR
ALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFCAALKALSRKEVHYGA
YATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFEREGTCPLCRALVKPADL
RSFSDGSTSLLFQIF
NT seq 1488 nt   +upstreamnt  +downstreamnt
atggttagggctagggcatcatctactgctgatacgataatggaagggtcagggaatatt
tctgatccgtacagaggcagaggcggaggaaatagtaatagcagtaacaattcttcacct
tcttcgtcgaggagatatggaatgttatcagcttctagtattcttcaagcgcctatttct
cttttattagagtattctggtctgttaagaactactcgttcatctcaccaagaaacagag
tctttgattcctggtggaggaggacttggttctactagacttgatggttcgtcggctgcg
gtggtctctaataatggggaggttgcgattaggataattgggtcgggggaacatgaacat
gacagggatagttctggtggattggttgtggggcaagttggtggagggcagaatgaggtg
ttgggacagcagcaaacgatgggtgcagatgttcttcagggtgatttgagaagtgatcat
gaaggaggagggggagatgccactggtggtgccggtagtcatcagagttcgagtgtgggt
ggggatggggaagctgctgatggggctgggggtaatgggagggattcaacataccagaga
tatgatatccagcaagctgccaggtggattgagcaagtgcttcctttttctttgcttcta
ttggttgtcttcattcgccagcatttgcaaggacttgcaggtttctttgttacaatttgg
attgctgttgtcatgttcaagtctaatgatattctacgaaaacaaacagctctgaagggt
gagaggaaagtctctatgcttgttggcatctctcttgcattcgcgattcatgtggtcggt
gtttactggtggtatcaaaatgatgatcttctgtacccattaattatgcttccccccaaa
tctatacctcctttctggcatgctattttcatcatcatggtgaatgatactttggtccgg
caggcagcaatggtattcaaatgtattctgttaatttcttacaagaacagtagaggccga
aattatcgtaaacagggtcaaatgcttactttggttgagtacctgatgctgctgtaccgt
gccttattgcctacaccagtctggtatcgtttctttttgaacaaagaatatggcagcctc
ttttcgtcactcatgactgggttgtatctaactttcaagctcacatctgttgttgagaag
gtacaatctttctgtgctgctttgaaggcattatcacgtaaagaggtgcactatggggca
tatgcaacatcagagcaggtcaatgcagcaggagatctgtgtgccatatgccaggaaaag
atgcacgcacctatactacttcgatgtaaacacatattttgcgaggattgtgtatcagaa
tggtttgagagggaagggacgtgccccttgtgcagggctttggtcaaacctgcagatctc
agatcgttcagtgatggctcaactagtttattattccagatattctag

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