Populus trichocarpa (black cottonwood): 18100065
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Entry
18100065 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18100065
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18100065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18100065
03019 Messenger RNA biogenesis [BR:
pop03019
]
18100065
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
18100065
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
18100065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
18100065
NCBI-ProteinID:
XP_006381311
LinkDB
All DBs
Position
6:complement(9025325..9033111)
Genome browser
AA seq
1084 aa
AA seq
DB search
MEMESTRRSFDRSREPGLKKPRLAEEQANHKGRPFTQRPAAAPAARYRPGVDRDLESNDS
NRSSAYQPQPVPQPQQYQELVSQYKTALAELTFNSKPIITNLTIIAGENLHAAKAVAATI
CANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDSSVHSSMRHL
FGTWKGVFPPQPLQMIEKELGLAPAVNGSSAGAAASRSESQSQRPPNSIHVNPKYLERQR
IQQSSRAKGVSNVLTVPVANSIEDVEGPDRAVSIDTRRPWVDPPVKTQTLQRSHREALNE
PVHEKKKIGAIYEDFEYGSDVSRKSGLGIGRASGRVAEQGQGQENPCYGTSSNAAELISG
QRNGFNMKHGFPNYPASKSSMVDLHLQPTQRIGRSETGISANWKNSEEEEYIWDMHSRLS
DHNAAGLSNNSRKDHWIPDDSDKMDLERLDGETSSDSLSTEQKEHATIGSRLSSPWKLPE
SHSTDGLILSGTSTTNTGHVEGYSATVGGVATSSRSSLGRMAVRPRLGSSHIGKAGLASS
TNTSLLSTETLGQQKFQSQGAASPSGQSPIRQRPSSPAFQACYPQLQNSGEQDYHQSQSM
TQPDYRAQFSGNLLPSNVQLGSLPKLHSEDLQAPSLPSFQLSHQHRLSQRRQPDSKESEA
FGQIQRPHLPPVSNFGTSSTSVSSAADHLNPFTAGTSGQSSTSSLLAAVMKTGILSKINS
GVVPDRNFQDIGKMPSQSIIQPPLPSGPPPQFSFSEARIESASSAPAQSQDKLPTVSNIS
QRKDERPPPPLGSPPSSEQTTDAVNKAPNPISNLLSSLVAKGLISTSKSETSSPLPTQVP
SQLQKKNPSITSPSSEPISSATLHSSTVGEASIPEPDTKCSVALSQTTKVEIDDLIGLEF
KPEVIRELHPPVISSLFEDLPHRCSLCGLQLKLKERLHRHLEWHNQRKPESDGINGPTRG
WYADLGHWLTVNDGLPLGVESSCPMDDFEETTECDDKTVLAHEDHCVCVLCGKLFEDYYC
EERNKWMFKGAVRMTLPSGDGQMGTAKESAKGPTVHVNCISESSLCDLVLASGIKMEKDV
YAST
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagtacgcgtagatccttcgatagatcaagagaaccaggcttaaagaaa
cctcgattagctgaagagcaagcaaaccataagggccgcccgttcacgcagagaccggca
gctgcacctgctgcaagatataggcctggagttgatagagatttagagagtaatgattcg
aatcgcagcagtgcataccagccacagccagtgccacagccacagcaataccaggagcta
gtgagtcagtataagactgctttggcggagctgactttcaattcaaagccaataatcact
aacttgactataattgcgggtgagaatctccacgccgccaaagctgttgctgcgacaatc
tgtgccaatattcttgaggttcccagtgagcaaaagcttccatctctttatcttttagac
agcattgtgaagaatattgggagggattacataaaatactttgctgccagactgcctgag
gtattctgtaaggcatataggcaggttgattcctctgtacattcaagtatgcggcatctt
tttggaacttggaaaggagttttccctcctcagccacttcagatgattgagaaggaactt
ggccttgctcctgcagtgaatggttcatctgcaggtgctgcagcgtctaggtctgagtct
cagtctcaacggccaccaaatagcatccatgtcaatcccaagtacttggaaaggcagcgc
attcagcagtctagtagggcaaaaggagtgtctaatgtcctgactgttccagtagccaac
tcaattgaggatgtggagggcccagacagagctgtcagtattgatactcgacgcccatgg
gtggatcctcctgttaaaacacagactcttcaacgctcacatagagaagcattaaatgag
cctgttcacgagaagaaaaaaattggtgccatatatgaggactttgaatatggttctgat
gtttcaaggaagtctggcttgggaattggaagagcaagtggaagggttgctgagcaaggg
caagggcaggagaacccatgttatggaactagcagcaatgcggcagagctaatatctggg
caaagaaacggttttaatatgaagcacggatttccaaattacccagcatccaagtcttct
atggttgatttacatctacagccaacacagagaattggaagaagtgagactgggatatct
gctaactggaaaaactctgaggaagaggagtacatttgggacatgcactctagattatca
gatcacaatgcagccggtctttccaataactcaaggaaagatcattggattcctgatgat
tcggacaaaatggatcttgaaagacttgatggagaaacttcttcagactcgttgtctacc
gagcagaaagagcatgctaccattgggtcccgtttatcctcaccatggaaattgccagag
tcccactcaacagatggattgatcctttctggaacttctactactaacacaggtcacgta
gagggctattcagccactgttggtggtgtggctacaagttcaaggtcttcattgggcagg
atggctgttcgaccacgcttgggttcatctcatattggaaaggcaggcttagcgtcttcc
acaaacacatccttgttgtccactgaaaccttagggcaacaaaagtttcagtctcaaggt
gctgcatcaccatctggacagtcacccatacgccaacgaccatcctcgcccgcatttcaa
gcatgctatccgcaattgcagaattcaggagagcaagactaccatcaatcccagtcaatg
acccagcctgattatagggctcaattttcaggaaatttgctgccttcaaatgttcagctt
ggtagcttgccaaaattgcactctgaagatttacaggctccttcattgccctcttttcaa
ctaagccaccagcatcgtctttcacagcgacgacaaccagattccaaagagtctgaagct
tttggtcagatccagaggccacacctgcccccagtctcaaattttggaacttcatcaact
tctgtaagttctgcagcagaccatttaaatccatttactgcaggaacttcaggacaatct
agcacaagtagtttgctggctgctgttatgaagactggaattctctccaaaataaattct
ggtgtcgtacctgatcgaaactttcaggatattgggaaaatgccatcacagtcaattatt
cagcctcctcttccaagtgggcctccccctcagttttcgttttcagaagccaggattgaa
tctgcatcttcagctcctgctcagtcacaagataagttgccaacagtgtcgaatatttct
cagaggaaagacgagcggccaccacctccacttggttctccaccttcatcagaacaaact
actgatgctgttaataaagccccaaatccaatttcaaaccttttgagctcgttagttgca
aagggtttgatatctacatcaaagtcggagacatcatctcctttgccaacccaggtacct
agtcaactacaaaagaagaacccaagcatcacttcacctagctctgaaccaatttcctct
gccactctgcattcatccacagtaggtgaagcatctatcccagaacctgataccaaatgt
tctgttgcactgtctcaaaccaccaaagtggaaatagatgatctcataggattggagttt
aagccagaagtaatccgagaactgcatccacctgtgatcagttcactctttgaggacctt
cctcatcgatgcagcttatgtggccttcaacttaaacttaaagaacgtcttcatagacac
ttggagtggcataaccagaggaagccagaatcggatggtataaatgggccaactagggga
tggtatgctgatttagggcactggcttactgtaaatgacggacttccattgggagttgag
tcttcttgtccaatggatgattttgaagagacaacggaatgtgatgataaaacggttctt
gctcatgaagatcattgtgtttgtgttttgtgtggtaagctttttgaagattattattgt
gaagaaaggaataaatggatgttcaaaggagcagttcgtatgacgttaccatccggagat
ggtcagatgggaaccgcaaaggagagtgctaaaggtcccaccgtgcatgtgaattgtata
tctgaaagttcactttgtgacttggtactagcaagcggcattaaaatggaaaaggatgtg
tatgcctcaacctga
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integrated database retrieval system
