KEGG   Populus trichocarpa (black cottonwood): 18100077
Entry
18100077          CDS       T01077                                 
Name
(RefSeq) splicing factor U2af small subunit B
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18100077
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    18100077
Spliceosome [BR:pop03041]
 Complex A
  U2 snRNP components
   U2 related factors
    18100077
 Complex B
    18100077
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4 Torus PqqF-like_C_4 zf-CCCH_4
Other DBs
NCBI-GeneID: 18100077
NCBI-ProteinID: XP_006381324
UniProt: U5G9Z3
LinkDB
Position
6:complement(9106959..9109734)
AA seq 311 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLLLSNMYQRPDMLTP
GVDPQAQSQSLDPRKIQDHFEDFYEDLFEELSKYGDIESLNICDNLADHMVGNVYVQFRE
EEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISR
ELRRQLFGRNRRRRSRSRSHSPDRHRGHEERPHGGRGLNRREDDREHHNERGRRPRSRSP
ARRGGRSSPGGRRNRSPVRESSAERRAKIEKWNREKEQTDSGGRGDSRNPENDRDNSDFA
ENGGHYDDAQH
NT seq 936 nt   +upstreamnt  +downstreamnt
atggcggagcacttagcatccatattcgggacagagaaagacagggtgaactgtcctttt
tacttcaagatcggagcctgcagacatggtgatcgatgctcaagactccacacaaagccg
acaatcagcccaaccctgttgctctccaacatgtaccagagacctgacatgctcactcct
ggagtggatcctcaggctcaatcccagtccctcgatccccggaagatccaagaccacttt
gaggatttttatgaggatttgtttgaagaactcagcaagtatggtgatattgagagctta
aatatctgtgataatcttgctgaccacatggtgggtaatgtgtatgtccagtttagagaa
gaagagcacgctgctaatgcccttcgcaatcttaacggaaggttttatgcagggcgaccc
atcattgttgacttttctcctgtcacggatttccgcgaagctacatgtaggcaatatgag
gaaaatgtttgcaatcgaggtggctactgcaacttcatgcatcttaagaagattagcagg
gaattgaggaggcagttatttgggaggaacagacgaagacgtagccgcagtagaagccat
agtcctgataggcaccgtggtcatgaggagcgtccacatggtggccgtggtttgaatagg
agagaggatgacagggagcatcacaatgaaaggggcaggaggcctagaagccgaagtcct
gcacgcaggggaggacgaagtagccctggggggaggagaaacaggagtcctgtcagagag
agtagtgctgaaagaagggctaagattgaaaagtggaacagggaaaaggaacagacagat
tctggtggtagaggtgatagcagaaaccctgaaaatgacagggataacagtgactttgct
gagaatggtggccattatgatgatgcccagcactag

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