Populus trichocarpa (black cottonwood): 18100097
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Entry
18100097 CDS
T01077
Name
(RefSeq) protein argonaute MEL1
KO
K11593
eukaryotic translation initiation factor 2C
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18100097
03036 Chromosome and associated proteins [BR:
pop03036
]
18100097
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
18100097
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
18100097
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
18100097
microRNA pathway
RISC loading complex
18100097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
18100097
NCBI-ProteinID:
XP_024458778
LinkDB
All DBs
Position
6:9322509..9329402
Genome browser
AA seq
925 aa
AA seq
DB search
MYGRGRRGGSPAPTKGGGRGRGRGAPLPSPMASSEADSISSVSQLGGEMERLSVQTEPPA
PTQAPAAIPAPQQQKQQQQQLVPASSVKFAQRPDHGTVGSRCLIRANHFLVELADRDLHH
YDVSITPEVASRGVNRAIMRELLASNSTHFQSRKPAYDGRKGFYTAGPLTFTSKDFVVTL
VDKDDQGSVRKERKFKVTIRLASKTDLYHLKEFLQGRQRGAPHDTIQVLDVVLREPPSNN
CTIVGRSFFTAGLGGQNEIGNGIECWKGFYQSLRPTQMGMSLNIDVSVAAFYEPILAVDF
VAKLLNLGDPIRAATRPLSDSDRAKLKKALRGVRVKVTHGEEKRYKITGISPSATNQLRF
AAEDGKQKSVVQYFLEKYNIRLRFASWPALQSGNDSRPIFLPMECCKIIEGQRYSKKLNE
KQVTALLREACRRPVEREHSIEQIVHFNDVAQDDLAKEFGVSVKKELTCIDARVLPPPVL
KYHDLGKARTVRPRVGQWNMINAKLFNGATVNFWMCVNFSSLGEQMAASFCRALVGMCNN
KGMVINPAPVFPIRSGHPNQLEKTLAEVHSMCNNERKQLQILIIILPDVSGSYGTIKRVC
ETELGIVSQCCQPKQARKCSPQYLENVALKINVKAGGRNTVLEDALNRRIPLLSDTPTII
FGADVTHPQPGEDSSPSIAAIVASMDWPEVTTYRGLVSAQKHRQEIIQDCAGMIRELMIA
FRRTTNQKPSRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEPNYLPPVTFIVVQKRHH
TRLFATNPNQTDKSGNILPGTVVDTKICHPSEHDFYLCSHAGIQGTSRPVHYHVLCDMNK
FTADCLQMLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYIEGDIASDSGGGGTGPP
VRREAAPVRPLPAISPNVKNVMFYC
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgtacgggagaggtcgacgcggtggctcgcctgctccgacaaaaggaggagggcgtggc
agaggacgcggagctccacttccttctcctatggcttcgtccgaggccgactctatctca
tccgtgagccagctcggtggtgagatggagcggctcagtgttcaaactgaaccacctgct
cctactcaggcaccagcggctattcctgcaccgcaacaacagaagcagcagcagcagcaa
ctcgtaccggcttcctctgtgaagttcgctcaaagacctgatcacggtacggtgggatcc
cggtgtctcattagagctaaccactttcttgttgagctcgctgaccgagacttgcatcac
tacgatgtttctataactcctgaggttgcatctcgaggggtcaacagagcaataatgaga
gagctgcttgcttcgaatagcacacacttccagagtagaaaacctgcttatgatggaaga
aagggattctacactgctggacctttaacattcacctcaaaggattttgtggttaccctt
gtagacaaagatgatcaaggatctgtgagaaaagagaggaaattcaaagtcactatccgg
ttggcatctaaaacagacctttatcatctcaaggagttcctgcagggaagacaaaggggt
gcgccgcatgataccatacaagtactcgatgtagtcctaagggaaccaccatccaacaat
tgcaccatcgttgggaggtcttttttcacagcaggtctgggtggccaaaatgagattggt
aatggtatagaatgctggaagggattctaccagtctctacgcccaacgcagatgggaatg
tctcttaacatagatgtatcagtcgctgccttctacgagccgattcttgctgttgacttt
gttgcaaaactattaaatttaggagatccaattagagcagcaaccaggcctttgtcagat
agtgatcgagcaaagttgaaaaaagctttgagaggagtcagagtaaaagttacccatgga
gaggagaagcgttacaaaatcactggaatatctccttcggcaacaaaccaactaaggttt
gctgctgaagatggaaaacaaaaatcagttgtccaatacttcctggaaaaatacaatata
aggcttcgttttgcatcctggcctgctcttcaatcaggaaatgattcaagaccaatattc
ctgcctatggagtgttgcaagattatcgaaggacaaaggtactcaaagaagttgaatgag
aagcaggtgacagccttattgagagaggcctgcaggcgccctgttgagagagaacatagt
attgagcagattgttcattttaatgacgttgcacaagatgatctagccaaagaatttgga
gtcagtgtcaaaaaggagctgacttgcatcgatgccagagtcttgccacctccggtgctc
aagtaccatgatttgggaaaagctagaactgtaagaccccgagtggggcagtggaacatg
attaatgctaaattgttcaatggggccacagtgaacttttggatgtgtgtcaacttctca
agtcttggtgagcaaatggctgctagcttttgtcgagccctggtaggcatgtgcaacaac
aaggggatggtcataaatcctgcacctgtattcccaatacggtctggccatcctaaccag
ctggagaaaacattggccgaagttcacagcatgtgtaataatgaaagaaaacagcttcaa
atcttaattatcattctccctgatgtcagtggaagttatggcacaataaaaagagtatgc
gaaactgaacttgggatagtttctcaatgctgtcaacccaagcaagcaagaaagtgtagt
cctcaatacttggaaaatgttgcgctgaaaattaatgtgaaggctggagggcgaaacaca
gtattagaggatgccctgaataggagaatacctcttctaagtgacaccccaactataatc
tttggtgctgatgtaacccatccacaaccaggggaggattctagcccttcaatagctgcg
attgtggcatcaatggactggcctgaagtaaccacctacaggggcctggtatctgctcag
aaacatcgtcaagagattattcaagattgtgctggaatgatcagggaacttatgattgct
ttcagaagaacaactaatcagaaacctagcagaataattttctatagggatggtgttagt
gagggccagttcagccaagttctcctgtatgagatggatgctatccgaaaggcttgtgca
tctctggaaccaaactatttgccaccagttacttttattgtagtgcagaagagacaccat
actcggctctttgctacaaatcctaaccaaacagacaagagtggaaacatccttcctgga
acggttgttgatacaaagatatgccatccttcagagcacgacttttatctctgcagtcat
gcaggaattcaggggactagcaggccggtgcactatcatgtgttgtgtgacatgaacaaa
ttcactgctgattgcctgcagatgttgactaacaacctgtgctacacgtatgcaaggtgc
acccgctctgtttctgtggttcctcctgcatactatgcacacttggcagcattcagggca
agatactacatagagggggacattgcatctgatagtggcggcggcggcacaggacctcct
gtgaggagggaagctgcccctgtccgcccacttccagccatcagccccaacgtgaagaat
gttatgttttactgttga
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