Populus trichocarpa (black cottonwood): 18100101
Help
Entry
18100101 CDS
T01077
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18100101
03015 mRNA surveillance pathway
18100101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18100101
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
18100101
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
18100101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
DUF5886
Motif
Other DBs
NCBI-GeneID:
18100101
NCBI-ProteinID:
XP_006381349
UniProt:
B9MTK9
LinkDB
All DBs
Position
6:9358660..9364565
Genome browser
AA seq
492 aa
AA seq
DB search
MAEVTETTAASSSEGQKPAVPETKRLWSDEVDDEEVQPSATEEKAVLELNVDALAIDENT
KVNKFLDEPEDSRIQAVTTGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISL
PMIMTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPKQQSPQALCICPTRELSIQNMEVLQ
KMGKYTGISSECAVPIESRNNDRSRYRPPISAQVVIGTPGTIKRLMSQKKLGVNDMKVLV
FDEADHMLAKDGFQDDSLRIMKDIQRFNSHCQVLLFSATFDETVKNFVSKVVKDYNQLFV
KKEDLSLESLKQYKVILPDELAKIRVVKDRILELGENIGQIIIFVNTKRSASMLHTSLVE
LGYEVTTIHGALNLEDRDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKYE
NQSEPHYEVYLHRIGRAGRFGRKGAVFNFIMTDHDLMIMRKIESYFNSPVAEIPSWGSEE
GFKVALKEAGLL
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagttactgaaaccaccgccgcttccagctccgagggccaaaaaccggcggtg
ccggagactaaaagattatggagcgacgaagtagatgacgaagaggttcagccgagcgca
acagaggaaaaagctgtcttggagctaaacgttgacgcattagctatcgacgagaacacg
aaagtcaacaagttccttgacgaacctgaagactctagaatacaagccgttacaacaggg
gatacaccatacacatcagcatccacatttgaagatttgaacctgtccccggagctactc
aagggtttgtacgtggagatgaaattccagaagcctagtaagattcaagctattagtctt
ccaatgatcatgactcctccatataaagatttgattgctcaggcacataatggttctggt
aagaccacttgttttgtgcttggcatgttgagtcgtgttgatccaaaacaacaaagtccc
caagcactctgcatttgccctacaagagagttatcgattcagaatatggaagttcttcag
aagatgggaaagtacactggaataagttcagaatgtgcggtgcccatagaaagcagaaat
aatgatagatccagataccgacctccaatatctgcacaagtggtgattgggactcctggt
acgataaagagattgatgtcgcaaaagaaattgggtgttaatgatatgaaggttcttgtt
tttgatgaagctgatcacatgctggccaaggatggctttcaagacgattccttgaggata
atgaaggacattcaaagattcaattctcattgccaggttcttctgttctctgccactttt
gatgagactgttaagaactttgtgtcaaaggttgtgaaagattacaatcaactttttgta
aagaaagaagatctgtcattagaatcattgaagcagtataaggtgattcttcctgatgaa
cttgccaagattagagtagtaaaagataggattcttgagctgggagagaacataggccag
atcattatatttgtcaacacaaagcgcagcgccagcatgctgcacacttcccttgtggaa
ttaggctatgaagtcactaccattcatggcgcacttaatcttgaagaccgagataaaata
gtcaaagaattcaaggatggattgactcaagttctcatatcaactgatgttctcgcccga
ggttttgaccaacaacaggttaatttggtaatcaattatgatctcccagtgaagtatgaa
aatcaatcagagcctcattatgaggtctacttgcacaggattggtagggctgggcgtttt
ggccgcaaaggggctgtgtttaatttcataatgactgaccatgatttgatgatcatgagg
aagatagagagctacttcaatagtccagtagctgagataccatcatggggcagtgaagag
ggcttcaaggttgctctcaaggaagctggtttgctgtga
DBGET
integrated database retrieval system
