Populus trichocarpa (black cottonwood): 18100140
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Entry
18100140 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18100140
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
18100140
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18100140
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
18100140
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
zf-RING_UBOX
zf-C3HC4
zf-ANAPC11
zf-rbx1
zf-C3HC4_2
Beta-prop_EIPR1
zf-C3HC4_3
Beta-prop_SPT8
zf-C3HC4_4
THSD1_N
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
18100140
NCBI-ProteinID:
XP_024458398
LinkDB
All DBs
Position
6:9753161..9760177
Genome browser
AA seq
631 aa
AA seq
DB search
MAEPYITDEQDYEAMQLLEIGLELSESEYSEEDEDFIPVVELDSSPRFLLNSDQATTTTA
AAAAENLNFQEEEVDVEEERNKRRRVEKLGSGGDICYRNGGDDAGGESSQNSQWNRSEFD
GLFCPICMEAWTNEGDHHICCLPCGHLFGLSCIEKWLRQRGRLAKCPQCNRKGTLRDIRK
LFVPRIAVVDEESQKRIRFLEEKCASLVKKDVDLCKKESEWKRREAALQLEVQKCKERTI
YLEHLLGDLQSRPSGVATAYRGSQGHEFGNSIYSDFNRQGSSSCFMLQRELRVDGARLFD
VDASGKILLLVRRVPMMGGSHVLTKMSLIPPHESEDIFLPPATKIIKDLHISPTNGSLAL
FASLGKKLSVLSMESNNVILSYDLPAAAWSCSWDLNCSHYVYAGLQNGSLLVFDMRITGS
PVESRLGHTTDPIHTVQSLQHISTLPSGVKTVVSASSVGMCQWNFGGEEERPFLIPETTN
QGVCVSLAYCASSDDIVVSYRPRVEMSNEVVSQTLFKPSLATGQGVLGSHLHLKRAGSNY
EKLGIACSTVSGIRLPKSSIIDRQNQKPLFATGDEVSCGLILQELPSFTATQRLKSHQHF
IYDVKYTSTHSQGLLGCLSEDTVQLFSTKLS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaccgtacatcacagacgaacaagactacgaagcaatgcaattattagaaata
ggattggaactatccgaatcggaatattccgaggaggatgaggatttcattcccgttgta
gaattggattcttctcctaggtttttgttaaattctgaccaagcaacaacaacaacagct
gcagcagcagccgaaaatctcaactttcaggaagaggaagtagacgtggaagaggagaga
aataagcgaagaagagtagagaaattaggaagtggaggagacatttgttaccgtaatgga
ggagatgatgctggtggagagagctctcaaaatagtcaatggaaccggagtgaatttgat
gggcttttttgccctatttgtatggaagcatggaccaacgaaggcgaccatcatatctgc
tgccttccttgtggacatttgtttggtctttcttgcatcgagaaatggttaaggcaacgt
ggaaggttagccaagtgtcctcaatgtaatagaaaaggtacattgagggatattaggaaa
ttgtttgtgccgaggattgctgttgttgatgaagaatcacagaagagaattcgatttctt
gaagaaaaatgtgcttctctggtaaagaaggatgtggatttgtgcaagaaagaatctgaa
tggaaaaggagagaagctgcattgcagcttgaagttcaaaagtgtaaagagaggacaatt
tatttggagcatttattaggagatttgcagagcaggccgtctggagttgccactgcctat
aggggctctcaaggacatgaatttggaaatagcatctactctgatttcaacaggcaggga
tcttcaagctgcttcatgttacagagagagttgcgggtggacggtgcacgtttatttgat
gttgatgcttctggtaaaattttattgcttgtgcggagggtaccaatgatgggtggatca
cacgtgcttaccaaaatgagcttaattcctccacatgaaagtgaagatattttccttcct
cctgccacaaaaatcataaaggacctgcatatatcccccactaatggaagtctcgcactt
tttgcttccttaggcaagaaactgtcagttctaagtatggagagcaacaatgtcatcctt
tcttatgacttgccggctgctgcttggtcttgttcatgggatcttaactgctcacactat
gtatatgctggactacagaatggttcacttttggtgtttgatatgcgtataactgggagt
cctgtagaatccagattagggcacacaaccgacccaattcatactgtacagtcccttcaa
catatctcaactcttccttctggtgtcaaaacagtggtgtctgcttcctctgttggcatg
tgtcaatggaactttggtggtgaggaagaaaggccatttttgatacctgaaacaacaaat
caaggagtatgtgtatcccttgcttattgtgcgagcagtgatgacattgttgtttcttat
cgtcccagagttgaaatgtccaacgaggttgtttctcaaactttatttaagccttccctt
gctactgggcaaggagtgcttggttctcatcttcatttgaagagagcaggcagcaactat
gagaagttgggtattgcatgttcaactgtaagtggtattagactgcccaaatctagcatc
atagacagacagaatcagaagcctctatttgccacaggggacgaagtttcttgtggattg
atcttgcaagagttgccatcttttacagctactcaacggcttaaatcacaccagcatttt
atttatgatgtgaagtacacaagcacacacagccaaggtttgcttggttgtttaagtgag
gatacagtacaacttttcagcaccaagctctcgtga
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