Populus trichocarpa (black cottonwood): 18100167
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Entry
18100167 CDS
T01077
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
18100167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18100167
03009 Ribosome biogenesis [BR:
pop03009
]
18100167
04131 Membrane trafficking [BR:
pop04131
]
18100167
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
18100167
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
18100167
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
18100167
Membrane trafficking [BR:
pop04131
]
SNARE
SNARE associated proteins
Others
18100167
Autophagy
Aggrephagy
Other aggrephagy associated proteins
18100167
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
18100167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_33
AAA_22
AAA_5
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
Mg_chelatase
AAA_28
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Vps4_C
Viral_helicase1
AAA_7
NACHT
NB-ARC
AAA_24
TsaE
AAA_lid_PRS2_C
Zeta_toxin
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
18100167
NCBI-ProteinID:
XP_006381424
UniProt:
U5GA86
LinkDB
All DBs
Position
6:10032793..10037707
Genome browser
AA seq
807 aa
AA seq
DB search
MSNQAEAESSDSKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVSLHPETMEKLQLFR
GDTILIKGKKRKDTICIALADDSCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKR
VHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEY
CVVAPDTEIFCEGEPVLREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG
VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAE
KNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID
PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMRLAEDVDLERIAKDTHGYVGADLAAL
CTEAALQCIREKMDVIDLEDETIDAEILNSMAVTDEHFKTALGTSNPSALRETVVEVPNV
SWEDIGGLETVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE
CQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAG
GAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRF
QIFKSCLRKSPVSKDVDLTALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRS
ENPEAMEEDVEDEVSEIKASHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
AEASAGATGSDPFAASAGGADEDDLYS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaagctgaagctgaatcctccgactctaagggaacaaagagggattttagt
actgcgattctggagagaaagaaggctccgaatcggcttgttgttgatgaggctgtaaac
gatgataactctgtcgtttcgcttcatcccgagaccatggagaagctccagctctttcgg
ggtgacaccatcttaatcaagggaaagaaaaggaaagatactatttgtattgccctcgct
gatgactcatgcgatgaaccaaagatcaggatgaacaaggttgtgaggtcgaacctgagg
gttaggcttggagatgtggtgtctgtgcaccagtgtcctgatgtcaagtatggaaaacgt
gtgcacatcctgcccatagatgacacaattgaaggggtcactggaaatctctttgatgcc
tacttgaagccttatttcctggaggcatatcgcccagtgaggaagggtgatctcttcctt
gtaagagggggaatgagaagtgtggagttcaaagttattgaaactgatccaccggagtac
tgtgtggttgctccagacactgagatcttctgtgagggagagcctgtgttaagggaggat
gagaatagattagatgaagttggttatgatgatgttggtggtgttagaaaacaaatggct
cagattcgggagttagtggagcttccattgagacacccacaactattcaaatcaattggt
gtgaaaccaccgaaaggtattctgctgtatggacctcctggttctgggaagactcttatt
gcccgagcagttgctaatgaaactggtgctttcttcttctgtattaatggacctgaaatc
atgtcaaaattggctggagagagtgagagcaatctcagaaaagcgtttgaggaagcagag
aagaatgcaccttcgattatatttatcgatgaaattgattcgattgctccaaagcgagag
aagacaaacggagaggttgagaggaggattgtatcccagctcttgacactcatggatgga
ctaaaatcccgggcacatgttattgtcatgggggctacaaatcgacccaatagcattgac
cctgctctgaggaggtttgggagattcgatagggaaatcgatatcggtgttccagatgaa
gttgggcgccttgaggttcttcgtattcatactaagaacatgaggcttgctgaagatgtt
gatttggaaagaattgccaaggatacccatggttatgttggtgctgatttagcagcactt
tgcactgaggctgcacttcaatgcatcagagaaaagatggatgtgattgatttggaagat
gagacaatagatgctgagatactcaactccatggcagtgactgacgaacacttcaagact
gctcttggaacaagcaacccatctgctttgcgtgaaacagttgtcgaagttcctaatgtt
agttgggaagatattggtggtctcgagactgttaagagagagctgcaggagactgttcaa
tatccagtggagcacccagagaaatttgagaagtttggaatgtcaccatcaaagggagtt
ctgttctacggtcctcctggatgtgggaaaactcttctggctaaagctattgccaatgaa
tgccaggcaaacttcatcagtatcaagggtcctgaattgcttacaatgtggtttggtgag
agtgaggccaatgtacgagaaatttttgacaaagctcgccaatctgctccttgtgtcttg
ttctttgatgaacttgactcaattgcaactcagagaggaagcagtgtgggagatgcgggg
ggtgctgctgatagagttttgaaccagcttctgacagagatggatggcatgtctgcaaag
aaaactgttttcataattggggcaactaacagacctgacatcatagaccctgccttattg
cgtccagggcgtcttgatcagttaatctatatccctcttcctgacgaggagtctcgcttt
caaattttcaaatcttgcttgaggaaatcaccagtctctaaagatgttgacctcacagca
cttgccaagtatacacagggtttcagtggtgctgatattacagaaatatgccagcgtgcc
tgcaaatatgccataagagagaacattgagaaagatatcgagagggagaggaggcgaagc
gagaaccctgaggctatggaggaagatgttgaggatgaggtgtctgagatcaaggcatca
cattttgaggaatccatgaaatatgcccgtcggagtgttagtgatgctgacatccgcaag
tatcaggcgtttgctcaaacactgcaacagtcaagagggtttggatctgaattcaggttt
gctgaagctagcgccggggcaactggatccgatccgtttgcagcttctgctggcggggct
gatgaagatgacctttatagctaa
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