Populus trichocarpa (black cottonwood): 18100208
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Entry
18100208 CDS
T01077
Name
(RefSeq) zinc finger protein JACKDAW
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
18100208
Transcription factors [BR:
pop03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
18100208
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GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-C2H2_jaz
zf-C2H2_STOP2_C
zf-met
zf-C2H2_4
zf-C2H2_6
Motif
Other DBs
NCBI-GeneID:
18100208
NCBI-ProteinID:
XP_006381470
UniProt:
U5GCW4
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Position
6:complement(10489859..10492372)
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AA seq
512 aa
AA seq
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MMSGDAFSLPSSIAGFAQDQNNANPNPSPKTNPNQAAKRKRNLPGTPDPDAEVIALSPKS
LMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKTCVHHDP
SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSR
KDSFITHRAFCDALAEESARITSVPAAANLNFRNDTVDLPHGFPDRPGVPDIAGIPQFNS
GFGPDFSGMTPGNSLGADQQKPGLSLWLNQATSPISPNLNLYVPSSSSGLPEMVQMGSAN
LYGSSSTANFGNLTLSGLPHGLKEEGSSKANMVNTSASLYSDSIQNKQSKPAAVPNMSAT
ALLQKAAQMGSTRSNQSFFGNNYGLMNCSSSSPTTNPISLNQNPNELHQVFQNVKQTAAE
SLTTTNSTVAMSDAMMGTSSNLDQLMMQTSGKLQNDQTQLKHQRGSNSIESGLTRDFLGM
SSESSRPFLPQDLAKFASISSAMSLNHFTVNP
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctggtgatgctttctcactaccatcttcaatagcagggtttgctcaagaccag
aataatgcaaaccctaaccctagccctaaaactaatcctaatcaagcggccaagaggaaa
agaaatttaccaggaacaccagatccagatgctgaggttattgctttatctccgaagtct
ctcatggctacaaaccggtttatatgtgaaatatgcaacaaaggatttcaaagagaccaa
aacttgcaacttcatcgaagaggtcacaatcttccatggaagctaaagcaaagaaccaac
aaagaggtacgaaagaaggtctatatttgcccagaaaagacctgcgttcaccacgatcca
tctagagctctcggagacttaactggcataaagaagcactttagcagaaaacatggggag
aagaagtggaagtgtgagaaatgttcaaagaagtatgcagttcaatcagactggaaagct
cactccaagacttgcgggactagagagtataaatgtgactgtgggactttattttccagg
aaagatagctttatcacacacagagccttttgcgatgccttagctgaagaaagtgcaaga
atcacttccgttccagctgcagccaatctaaatttcagaaatgatacagtagatttgcct
catggatttcctgaccggccgggagttccagatatcgcaggcattccacaattcaattca
ggttttggacctgatttcagtggcatgactccaggaaattctcttggtgctgatcaacaa
aagcctggactttctctgtggctaaatcaagccacttcacctattagtcccaatttaaat
ctttacgtgccttcgagttctagtggtttgcctgaaatggtgcaaatgggatcagccaat
ctctatggttcatcgtccaccgccaattttgggaatttaaccttatctggactccctcat
gggctaaaggaagaaggtagtagtaaagccaatatggtgaatacatcagcttctttgtat
tctgatagtattcagaacaagcaatcaaagccagctgcagtgcccaatatgtctgccact
gcacttctgcaaaaggcagctcaaatgggttctacaagaagcaaccaatctttctttggc
aacaattatggactaatgaactgttcttcttcttctcctacaacaaaccccatctctctc
aaccagaatccaaacgagctacaccaagtctttcaaaatgttaagcaaactgcagccgag
agcctaacaacaacaaatagtactgtagcaatgagtgatgcaatgatgggtacatcaagc
aaccttgatcaacttatgatgcaaacaagtggaaaactacaaaatgaccagactcagttg
aagcatcaaagaggttcaaattctatcgagagtggtttaacaagagattttctgggtatg
agtagtgaatccagtcgtccatttttaccacaagacctagcgaagtttgcttcaataagt
tcagccatgagcttgaaccatttcactgtcaatccttga
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