Populus trichocarpa (black cottonwood): 18100233
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Entry
18100233 CDS
T01077
Name
(RefSeq) probable DNA helicase MCM8 isoform X1
KO
K10737
DNA helicase MCM8 [EC:
5.6.2.4
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
18100233
03400 DNA repair and recombination proteins [BR:
pop03400
]
18100233
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
18100233
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
18100233
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
18100233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MCM
WHD_MCM8
MCM_OB
MCM_lid
AAA_5
Mg_chelatase
AAA_3
Sigma54_activat
NTPase_1
AAA_16
AAA
AAA_30
AAA_29
Motif
Other DBs
NCBI-GeneID:
18100233
NCBI-ProteinID:
XP_024459462
LinkDB
All DBs
Position
6:10753875..10762210
Genome browser
AA seq
794 aa
AA seq
DB search
MYGTHGESASRKKQHHHYASDDVVNILATYCPSNELAVDEEKLMLTCHLIHFFSNTPPGE
DLASQVKDKNGAYYLSIDFQQFQNIRELEEFYATLEEKPKVALSCMGAAVHKVFLSKCED
NFLDDGMKINIRLHNYPESMIALKNLKAAYIDKLVSVRGSVVKVSNVRPLVVQMNFNCAK
CKYSILRIFPDGKFSPPTVCSLNGCKSRTFNPIRSSARAIDFQKIRLQELLRSEDHEEGR
VPRTVECELTEDLVDACIPGDVVTVTGIIKTFNSNLDTGGGKSKNKNQGFYYLYLEVVSI
KNSKLQSTSDNLQDSKCNARATELSDLFSFSPRDLEFIVKFSEEHGSDIFRQILQSICPS
IYGHELVKAGITLALFGGVRKHSMDPNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVCPR
GIYVCGNATTNAGLTVAVVKDAKTSDYAFEAGAMVLADSGLCCIDEFDKMSAEHQSLLEA
MEQQCVSVAKAGLLASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL
LDKPDEVLDKRVSDHIISLHAGYGEYSQAAKKLRTASLHGGIDMSVRNGSLVSRLRLDPK
KDADFAPLPGPLLRKYIAYARTYVFPRMSKPAAEILQKFYLQLRDHNTSADCTPITARQL
ESLVRLAEARARLELREEVTAQDATDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEA
KRFLSALNRQSELQRKDTFSISEIYSLADRIGLRVPDIDTFVDNLNSAGYLLKKGPKTFQ
VLTSSYSRSQSSRG
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgtacggaacacatggagagagcgcgagcagaaagaagcaacaccaccactacgcaagc
gacgacgtcgttaacatattggccacatactgcccttcaaacgagttggctgtcgacgaa
gaaaagctgatgctcacttgtcatctcattcacttctttagcaatactcctcctggtgag
gatctcgcttctcaggtaaaggataaaaatggagcgtactatttgtctattgattttcaa
caatttcaaaatatacgtgaacttgaggaattctatgcaactttagaagagaaacctaaa
gtagctctctcgtgcatgggggctgcagttcacaaggtgtttttgagcaaatgcgaggac
aacttcttagatgatggcatgaagataaacatccgtcttcacaactaccctgaatctatg
attgctttgaagaacctaaaagcagcatatattgacaagcttgtatctgtgcgggggagt
gtggttaaagttagcaatgtgaggccactagtggtacaaatgaatttcaactgtgcgaag
tgcaaatacagcattttacgtatatttcctgatggaaaattttcaccaccaactgtttgc
tctttaaatgggtgcaagagcagaactttcaatccaattagatcttctgctagagccata
gattttcagaaaataaggctacaggaattactaagatctgaagatcatgaagaaggacgg
gtgccacgaacagtggaatgcgaattgactgaagatcttgttgatgcatgcatccctgga
gatgtggtgactgtcactggcattataaaaacattcaatagcaatttggatacaggagga
ggaaaatcaaaaaacaaaaatcaaggattttattatttgtatctagaagtggtctctata
aaaaactcgaagttgcaatctacatctgacaatttgcaagattccaaatgtaatgcaaga
gctacagaactgtctgatctgttctcattctctccacgagatctggaatttattgtgaag
ttctcagaagaacatggttcagatatcttccggcaaatacttcagtcaatatgtccatct
atctatggacacgagcttgttaaagcggggataacattagcactgtttggaggtgtccgg
aagcattcaatggatccgaataaggtccctgtcagaggagacatccatgttataattgtt
ggtgatcctggactaggcaagagtcaattactgcaagcagcagcagctgtttgtccacgt
ggcatttatgtgtgtggcaacgctacaactaatgctggcctcactgtagctgtggtcaag
gatgccaagacaagtgactatgcttttgaggctggggcaatggtgctcgcagacagtgga
ctctgttgtattgatgaatttgataaaatgtctgcagaacatcagtctcttctagaagct
atggagcagcaatgtgtctctgttgctaaggctggtctccttgcaagtttatcagcacga
acttctgttttagcagcggcaaatcctgttggtggtcattacaaccgtgcaaagacagtg
aatgagaacttgaaaatgagtgctgctcttctctcacggtttgatttggttttcatatta
cttgacaaacctgatgaagtgctggataaacgagtctcagatcacatcatatcacttcat
gctggatatggagaatattcacaagcagccaaaaagttacggacagcatcactgcatgga
ggcatagatatgagtgtaagaaatggatccttggtttcacggttaagactggacccaaag
aaggatgctgattttgctccattacctggtccacttcttcgcaaatatattgcttatgct
agaacttatgtctttcctaggatgtcaaaaccagcagcagaaatactacagaagttctac
ttgcagcttagagaccacaatacatcagctgattgtacaccaataacagcgaggcaactg
gaaagtttggtgaggctggctgaagctcgagctcggctagagttgagagaagaagtaaca
gcccaagatgcaacggatgtggttgaaataatgaaagaatccctatatgataaatatgta
gatgagcacggcgttgtagattttggtcgaagtggggggatgagtcaacaaaaggaagca
aaacggtttctaagtgccctcaataggcagtcagagttgcagcgaaaagataccttttca
atttctgaaatatacagtttagcagacagaattggcctaagagttccagatatcgacacg
tttgtggataacttaaacagtgctggttatctactcaagaagggaccgaagacatttcag
gtgctaacatcttcttactcccggagtcagtcatcaagggggtaa
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