Populus trichocarpa (black cottonwood): 18100234
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Entry
18100234 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
18100234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
18100234
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
18100234
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
HECT type E3
18100234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Motif
Other DBs
NCBI-GeneID:
18100234
NCBI-ProteinID:
XP_006381496
UniProt:
U5G6X6
LinkDB
All DBs
Position
6:complement(10763946..10772436)
Genome browser
AA seq
1574 aa
AA seq
DB search
MGNRGQKRAEMVNELPSDKRACSSLEFRPSSSNSSIQTQINSENHNAETHDADMDTSSSG
SASSHSDEEEPERDSAYGSCDSEGPRHSSLREYQRQRSSGDHSRLRDCLSNLTEGTEPSG
QLAALTELCEVLSFCTEDSLSSTMADSLSPVLVMLSRLESNPDIMLLAIRALTYLCDVFP
RASVFLVKHNAIPAICQRLMAIEYLDVAEQCLQALEKISRDQPLPCLQAGAIMAVLSFVD
FFSTSVQRVALSTVVNICKKLPSENFSPFMEAVPRLCNLLQYEDRQLVENVAICLIKIAE
RVSQLSEMLDELCKHGLINQATHLVQLNSRTTLSQPVYNGLIGLLVKLCSGSVVAFKTLY
ELNISSILKDILTTYDLSHGMSSPHVVDGQGNQVHEVLKLLNVLLPIIARDQDVQQHVLD
KETFLANHPKLLQKFGLDIIPSLIQVVNSGANLYVCYGCLCVINKLVYLSKSDMLLELLK
NTNIPSFLAGVLTRKDHHVLMLALQITETILQKLPDVFVNSFIKEGVFFAIDALLVSEKC
SQLMFPVCSGIQLPIDASLKSSSKVVMRCLCYAFDTGQSLSTTETGTCKLEKDSVQNLAK
HIRTSCFASELCNSEKGLTDILQKLRALSAELSDLMNMPGNIGSCTQDEEKCYCVLRQII
EKLDGREPVSTFEFIESGIVKILVNYLSSGKYLREKVEPQGTLDDCDVIEKRFEVFARLL
LSSPDLSVEFPLSVLIQKLQGALSSLENFPVILSHASKQRSSFAIIPTGHCTSYPCLRVR
FVRGKGETCLCDYSEDVVTVDPLSSVDAIEGYLSPKVRIKGTEQIESAAQAIEGALSAEN
AQFKSPSTANSSQGESSGLMEPDSIATDLPVMQEDEANLSQSPPEPDVNLLQRNPDETTS
SNNTHNVSVEKIVQSPSCADVTTKGHCLMSCSNGDALPKLVFYLEGQRLDQTLTLYQAIL
QQKVKADREINSTAKLWTQVHTLTYGMVVDPKDDSPPDHSSTAQNSSMLDQVGAYMQHPA
FFSSLFNGELTSDLDKYSPTNDVLFLLKSLEGLNRFIFHLMSRERIHAFAEGLIDNLGYL
KVAVRPVSQNEFVSCKLTEKLEQQMRDSLAVSIGGMPVWCNQLMDSCSFLFSFEARCKYF
RLSAFGRQQVQPQPSSHNNSGVSRDGPPSAGSLSRKKFLVLRDRVLESAAQMMDSYAHVK
APIEVEYNEEVGTGLGPTLEFYTLVSREFQKSGLGMWRQDHISFTTSETLQAEYSGIVNS
SFGLFPRPWPSSVDASDAAQFSEVIKKFFLLGQIVAKALQDGRVLDLPFSKAFYKLILQQ
ELNLYDIQSFDPELGRTLLEFQALVNRKKNMGSAFGENSSSALDACFWNTKIEDLYLDFT
LPGYPDYVLSFDEDHKIVNMVNLDAYVSRIVDATIHTGISRQVEAFKSGFNQVFPIKHLM
IFTEEELERLLCGEREFWAFNELLDHIKFDHGYTASSPPVVNLLEIIKEFEYEQLRSFLQ
FVTGAPRLPTGGLASLNPKLTIVRKHCSNCADADLPSVMTCANYLKLPPYSSKDKMKEKL
LYAITEGQGSFHLS
NT seq
4725 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatcgtggacaaaaacgagctgagatggttaatgaattgccctctgataagaga
gcttgtagttcattggagtttagaccaagttcatcgaactcatcaattcaaactcaaata
aattctgagaatcataatgctgaaacccatgatgctgacatggatacttcatcatctggg
tcggcatcaagccattcagacgaagaagaacctgagagggattcagcatatggctcttgt
gattctgagggtccaagacatagcagtttgcgtgagtatcagaggcagagatcctctggt
gatcatagcagattgagggattgtctatctaatttaactgaaggaactgagccttctggg
cagttagctgctcttacagagttatgtgaagtgctttcattttgtacagaggattcactt
tcaagtacgatggcagactctttgtcaccggtgcttgttatgctttcaaggcttgagagt
aacccagatataatgctattggctataagggctttaacttatctgtgtgatgtgttcccc
cgagcatccgtttttcttgttaagcataatgcaattcctgctatttgtcaaagattaatg
gccattgaatacttggatgtagctgaacagtgcttgcaagcattggagaaaatatctcgc
gatcaaccacttccatgcttacaagctggggcaataatggcagttctaagttttgtagac
ttcttctctacaagtgtacaaagagttgcactttcaactgtggtgaacatatgcaagaaa
ctgccatcagaaaatttttcaccattcatggaggctgttccgagattatgcaatcttcta
caatatgaggataggcagcttgtcgaaaatgtagcaatttgcttgatcaaaatagcagaa
cgggtcagtcagttgtcagagatgctggatgaactatgcaagcatggactaattaatcaa
gctactcatctagtgcaattgaacagccgaacaacactatctcagccagtatacaatggt
ttgattgggcttcttgtcaaactttgttctggttcagttgtcgccttcaagaccctgtat
gagctcaatataagcagcattttgaaggacatattaactacttatgacctctcgcatgga
atgtcttctccacacgtggttgatgggcagggtaaccaggtacatgaagtgctaaagttg
ctaaatgtgcttctccctattatagcaagagatcaagacgttcaacagcatgtgttggat
aaagagacatttttggctaatcaccctaagctcttgcagaagtttggattggatataatt
ccctcgttgattcaggtggttaattctggtgcaaatctatatgtttgctatggctgctta
tgtgttatcaacaagttggtttatctcagcaaatctgacatgcttcttgagttgcttaag
aatacaaacattccaagttttttggctggagttcttacccgtaaggatcaccatgtgctg
atgttagccctgcaaattactgagacaattctccaaaagcttccagatgtttttgtgaac
tctttcatcaaggaaggtgtcttttttgccattgatgcccttctcgtgtcagaaaaatgt
tctcaattgatgttcccggtgtgcagtggcattcagcttccaatcgatgctagtctaaaa
tcttcctcaaaagtagtcatgagatgtttatgttatgcttttgatactggtcagtctctt
tcaaccacagaaacaggaacatgcaagcttgaaaaggacagtgttcaaaatcttgcaaag
cacatcagaactagttgctttgcttcagaattatgcaactctgagaaaggattgacagat
atccttcagaagcttagggctctttcagctgaattgagtgatttgatgaatatgcctggc
aatattggctcttgcactcaggatgaggagaaatgttattgtgtgttgcgtcaaatcatt
gaaaagcttgatggaagagaacctgtgtctacttttgaattcattgaaagtgggattgtg
aagatattagtgaattacttgtccagtggcaaatatctgagagaaaaggtggagcctcag
ggtacattggatgattgcgacgttatagagaaaagatttgaggtgtttgcaaggctactt
ttatcttccccagacctatctgtagagtttcctttatcagttttaatacagaaattgcaa
ggtgcattatcttctttggagaatttccctgttattttgagccatgcatccaagcaaaga
tcctcgtttgcaatcattcctactggacattgcacatcttatccgtgcctaagagtacgt
tttgtcaggggaaagggtgagacatgcctctgcgactactctgaagatgttgtgacagta
gaccctctttcttctgtggatgcaattgaaggatatttatcgcctaaagttagaataaaa
ggaacagagcaaatagaatcagctgctcaagctatagaaggcgcgttgtcagcagaaaat
gcacagttcaaatcaccatcaactgcaaactccagtcaaggggaaagttcaggactcatg
gagcctgatagtattgctactgatttgcctgtaatgcaggaagatgaagctaacctatct
cagtctccaccagaaccagatgtaaatttgttgcagagaaatcctgatgaaacaacatcc
tcaaataatactcataatgtctcagtggagaaaatagtgcagtctccttcatgtgctgat
gtcactacaaaaggtcattgtcttatgtcctgtagcaatggagatgctctgccgaaactg
gtattttacctagaagggcagcggctggaccaaactttgactctttaccaggcaattctc
cagcaaaaagttaaagcagaccgtgaaattaacagcactgcaaagctgtggactcaagta
cacaccttgacttacggaatggttgtggaccctaaagatgatagtcctccagatcattct
agtacagctcaaaattcctctatgttagatcaagttggggcttatatgcagcatcctgca
tttttctcaagcttgtttaatggcgaactcacttctgacctggataagtatagtcctact
aatgatgtattgtttctgcttaaaagtttagaaggtttaaacaggtttatatttcatctg
atgtctcgtgaaagaatccatgcatttgctgaagggctgattgataatttgggttattta
aaggtagcagttcgcccagtatcacaaaatgaatttgtgagctgtaagttgaccgagaaa
ttggagcaacagatgcgggattctctggctgtgtccataggtggcatgcctgtgtggtgc
aatcagctcatggattcatgctcctttttgtttagctttgaggctagatgtaaatatttc
cgcttgtcagcattcggccgtcagcaagttcaaccacagccatcatcacataataattca
ggtgtctcaagggacggaccaccaagtgctggcagtttgtcccgtaagaaattcctagtt
ttgcgtgaccgagttctggagtctgctgcccagatgatggatagttatgctcatgttaaa
gcacctattgaagtggaatataatgaagaagttggtactggtctcggtccaaccttggaa
ttttatactctggttagtcgtgagtttcagaagtctggccttggtatgtggaggcaggat
catatttcatttaccaccagcgagaccctgcaggctgaatactctggaattgtgaactct
tcatttggactttttcctcgcccatggccgtcttcagtggatgcatctgatgcggcacag
ttttctgaagttattaaaaagtttttccttctgggacaaattgtagccaaggctcttcaa
gatgggagggtgctggatctaccattctctaaagccttctataagcttattcttcagcag
gaacttaatttgtatgacatccagtcctttgatcccgagcttggtaggacattgctagag
ttccaggctcttgtcaacaggaaaaaaaatatgggatcagcctttggagaaaactcatct
tctgctctagatgcatgcttttggaacaccaaaatcgaggatctttatcttgactttact
cttcctgggtatcctgattacgttcttagttttgatgaagatcacaaaattgtgaatatg
gttaacttggatgcttatgtttctcgcattgtggatgctactatacacacaggaatttcc
agacaagttgaagcattcaagtctggatttaaccaggtttttcctattaaacatcttatg
attttcaccgaggaggaacttgagcgtttgctatgtggagaacgtgaattttgggctttc
aatgagcttttggaccatatcaagtttgatcatggatacactgctagcagccctcctgtt
gttaatttgctggaaatcataaaggaattcgaatacgaacaactacgatcatttctacag
tttgtaaccggggcacctcggctacctacaggaggcttggcatctctgaatccaaaattg
accattgtccggaagcattgtagcaactgtgcggatgcggaccttcccagtgtgatgact
tgtgccaattatctgaagttgccaccttactcgtcaaaagacaagatgaaagagaaactt
ctgtatgccataacagagggtcaaggatcattccacctctcgtag
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integrated database retrieval system
