Populus trichocarpa (black cottonwood): 18100238
Help
Entry
18100238 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18100238
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18100238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
18100238
03019 Messenger RNA biogenesis [BR:
pop03019
]
18100238
04121 Ubiquitin system [BR:
pop04121
]
18100238
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
18100238
Transcription factors [BR:
pop03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
18100238
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
18100238
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18100238
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
18100238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
PcfJ
FYVE
Rtf2
Motif
Other DBs
NCBI-GeneID:
18100238
NCBI-ProteinID:
XP_052309511
LinkDB
All DBs
Position
6:10812702..10820404
Genome browser
AA seq
963 aa
AA seq
DB search
MSDKGDKTCPLCAEEMDLTDQQLKPCKCGYEVCVWCWNHIMEMADKDNSEGRCPACRTPY
DKEKIVGMAANCERLVAEMHSERKLKSHKVKPKTSDGRMHLSNVRVIQRNLVYIIGLPLN
LADESLLQRKEYFGQYGKVLKVSISRTATGAIQHAANNSCCVYITYAKEDEAVRCIQSVH
SFVLEGRSLRACFGTTKYCHAWLKNTPCSIPDCLYLHDFGSEEDSFTKDDLVSAFTRSRV
QQIVGATNNLHRRSGNVLPPSADESTNRNISSTAKLDANASSNQNIVNWDSGSCADSGAG
RSNTLHGASSWVTRVAGSLPPVTSLSSSGGTPNHKPETSHGDHGLAPEVVITKSSGDIKR
TIPEGSCEVHPANLTLIDHFPCPPASQDSASDTDEPPAGTSPSKITKLSYFTGLDEDENF
HADGNLQGLCSGLSSISIDDHLKDEYREPVTPDISISNHKLPKSQGSQPFVSEPPSNSSS
SPTLRECAIVEDLLCFDDREVQGFGSIHHEPPISSLLSPKQYLEQSTYHSWQQGENCQST
IDVHPSIVPAKHDEVAFPFRSGNTVLSKGLHDRQANGLFEWDRSSNYSSVLSEVGPGKCL
EEHGSNVASIDYKLDLDTDESSIISNILSIDSGVWEDSLTSPQSFVKLLADNDKQQSCRK
IPCMRKAQESSQSRFSFARQDGFSNHLSNFEHSLENATNKSSSSNYIIENKDPWMDNYRG
ISSNISSVESNGFLSKHPFTSSFSVSKTSTSPPPGFSVPSRVVPPGFPTHGAMHYDFDHS
ANHFLQNSAPLSRNIGISGDVEFIDPAIMEVGKGFLSARLNNPGFDAKPALSPHFSPFDH
DSELQMLMRQSISAQQNMRLSDRFRNRFSPPDDTYSISPVLLGQSPPNKPSSFTQLTAQQ
LRNVHISNGSLGGWNEVKNVSDPCMPEFLGNGGMGFSKFVPSYEDLKYQMSGSSNLYNRG
FAM
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaagggagacaagacatgcccattgtgtgctgaggagatggatttgactgat
cagcaattgaaaccatgcaaatgtggttatgaggtctgtgtttggtgctggaatcacatt
atggaaatggccgacaaggataactccgagggtcgctgcccagcgtgtcgtacaccttat
gacaaagaaaaaattgtggggatggcagcaaattgtgaaaggctagtagctgaaatgcat
tcagagagaaaactgaagtcccataaggtgaagccaaaaacatctgatggaaggatgcat
ctaagcaatgttagagtcattcaaaggaatctagtgtatataattggattacctcttaat
cttgcagatgaatcccttcttcagcgaaaagagtactttggccaatatggaaaggttctg
aaggtgtctatatctcgaaccgcaacaggggcaattcaacatgctgcaaacaacagttgt
tgtgtgtatataacatatgcaaaagaggatgaagcagttcgttgtattcaatcagtgcac
agttttgtcttagaaggtagatccttgagggcatgttttggaacaacaaaatactgccat
gcatggctgaaaaatacgccttgcagcattccggactgtttatatttgcatgattttggc
tctgaggaagatagttttacaaaagatgatttagtttcagcctttacaaggagtagagta
caacaaattgttggtgctacaaataatttgcatcggcgttcaggaaatgttttgccaccc
tcagcagatgaatccaccaataggaacatatcatccacggccaaacttgatgccaatgct
tcttcaaatcaaaatattgtgaactgggatagcgggtcatgtgcggatagtggtgctgga
agatccaatacacttcacggggcatcttcatgggttacgcgtgtcgctggcagtttgcca
ccagttacaagtttgtcatcatcaggtggaactcccaatcataaacctgagacatcacat
ggggaccatggtcttgcgccagaagttgtgatcaccaaaagttctggtgatataaaaaga
accatacctgaaggaagctgtgaagtgcatcctgccaatctaacattgattgaccatttt
ccttgtcctccagcatctcaggacagtgctagtgatactgatgaaccaccagctggaact
agcccttcaaaaatcactaaactgtcctattttactggtctggatgaagatgaaaatttt
catgcagatgggaacttgcagggactatgctctggattatcatcaattagcattgatgat
caccttaaggatgagtaccgtgaacctgttactccagatatttcaatttctaatcataaa
ctgcccaaaagtcaaggctcacaaccttttgtgagcgagccacctagtaattcttcatcc
tcgccaacactgagagaatgtgcaattgttgaggatttactatgttttgatgatcgggaa
gtccagggctttggaagcatccatcatgaaccacccatttcatctttactttctccaaaa
cagtatttggagcagtcaacctatcattcctggcagcaaggcgagaattgtcaaagcact
attgatgtacatccaagcattgttcctgctaagcatgatgaggttgcttttccattcaga
tctggcaacactgttttgtctaaagggttgcatgacaggcaagctaatggcctttttgag
tgggataggtcttctaactattctagtgtcttgtcagaggtaggaccggggaagtgcttg
gaagaacatggtagtaatgtagctagtattgactataaacttgatctagatacagatgag
agcagcattatctcaaatattctatccattgattctggtgtatgggaagattcgttgaca
tcacctcagagttttgtcaagttgctggctgataatgataaacaacaaagttgccgcaaa
ataccatgcatgcgaaaagcacaggagagtagtcaatcaaggttctcatttgccaggcag
gatggtttctctaatcatttgtctaattttgagcattcacttgaaaatgcaacaaataaa
tcttcttcctcaaattatattattgaaaacaaggatccttggatggacaattatcgtggc
atctcttcaaatattagttccgtggaatcaaatggtttcctcagcaagcatccttttaca
tctagtttttctgtttccaaaacttccacttctcccccaccaggattctcagtgccaagt
agagttgtacctccaggctttcctactcatggggcaatgcactatgattttgaccattct
gcaaatcattttctacaaaactctgcaccactatctcggaacattggcatctctggggat
gttgaattcattgatcctgcaataatggaagttggcaaaggatttctgtcagcaaggctg
aataatcctggctttgatgcaaagccagcattatctcctcattttagtccttttgatcat
gattcagagcttcagatgctgatgcggcaatcaatttctgcacagcagaacatgaggtta
tcagatcgcttcaggaatagattctctcccccagatgatacttactccatttcacctgtg
cttctgggtcaatccccgcccaacaaaccttcatcatttacacagttgacggctcaacag
cttagaaatgtgcacatctcaaatggcagtttgggtggttggaatgaggtaaaaaatgtt
agtgatccttgtatgccagaattcctaggaaatggagggatgggatttagcaaatttgtt
cctagttatgaggatttgaagtatcagatgtctggttccagcaatctatacaaccgagga
tttgcaatgtga
DBGET
integrated database retrieval system
