Populus trichocarpa (black cottonwood): 18100270
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Entry
18100270 CDS
T01077
Name
(RefSeq) DNA repair protein RAD51 homolog isoform X1
KO
K04482
DNA repair protein RAD51
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03440
Homologous recombination
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
18100270
03460 Fanconi anemia pathway
18100270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
18100270
04121 Ubiquitin system [BR:
pop04121
]
18100270
03400 DNA repair and recombination proteins [BR:
pop03400
]
18100270
Membrane trafficking [BR:
pop04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
18100270
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
18100270
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
18100270
RecA family proteins
18100270
FA (Fanconi anemia) pathway
Other FA pathway factors
18100270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rad51
RecA
AAA_25
HHH_5
ATPase
DnaB_C
AAA_22
HHH
Motif
Other DBs
NCBI-GeneID:
18100270
NCBI-ProteinID:
XP_024459211
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All DBs
Position
6:11141320..11145046
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AA seq
342 aa
AA seq
DB search
MEQQRNQKAVNQQQHEDHEEVQHGPFPVEQLQASGIASLDVKKLKDAGLCTVESVAFSPR
KELLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRQEIIQITSGSRELDKILEGGV
ETGSITEMYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADR
FGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGE
LSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHAST
TRLALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggagcaacaaagaaaccaaaaggctgttaatcaacaacaacatgaggatcatgaagag
gtgcaacatgggcctttccctgttgaacagcttcaggcgtcaggcatagcttcccttgac
gtaaagaagcttaaagatgcgggtctctgcacagttgaatctgttgccttttctcccagg
aaagagcttctgcaaattaaaggaatcagtgaagctaaagttgacaaaatcatcgaagca
gcttccaaactggtgcccctgggttttactagtgctagccaactccatgctcagaggcaa
gagataattcagataacatctgggtcaagagagcttgacaaaattttggaaggaggggtt
gagacaggatctattactgaaatgtatggtgagttccgctctggaaaaactcagctgtgc
cacacgctttgcgtcacttgccaacttccattagatcaaggaggaggtgagggaaaagca
atgtacatagatgcagagggcacattcaggccacaaagactcttacagatagctgatagg
tttgggctgaatggcgctgatgttttggagaatgtggcttatgctcgggcatataacacc
gatcatcaatcaaggcttttgctcgaagcagcttcaatgatggtggaaacaaggtttgct
cttatgatagtagacagtgctactgctctatacagaacagatttttctggaaggggagag
ctttcagctcggcagatgcatctagcaaagttccttaggagccttcagaagttagcagat
gagttcggtgtggctgttgtcattacaaaccaagtagttgcacaagttgatggttctgct
atttttgctggacctcaaatcaagcctattggtggtaacatcatggctcatgcttctaca
acaaggcttgctcttcggaagggaagaggggaggagcgcatctgtaaagtaataagttct
ccttgtttagctgaagctgaagcacggttccagatctctgctgaaggcgtcactgatgtc
aaggactga
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