Populus trichocarpa (black cottonwood): 18100295
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Entry
18100295 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18100295
KO
K14794
ribosomal RNA-processing protein 12
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pop03009
]
18100295
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
90S particles
Other 90S particles
18100295
Pre-60S particles
Other pre-60S particles
18100295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_RRP12_N
RRP12_HEAT
Nipped-B_C
DUF6279
Motif
Other DBs
NCBI-GeneID:
18100295
NCBI-ProteinID:
XP_024459710
LinkDB
All DBs
Position
6:11457608..11467642
Genome browser
AA seq
1275 aa
AA seq
DB search
MEGIELDAPSLSFPENDFCDSILSRYSTSTQDDHHHLCAIIGTMSQELKDQNLPCTPIAY
FGAACSSLDRLSSSYSDPSPYVIDSLITILSLALPRISIPILKKKRELVSNVVVRVLKLN
YSVTAGAVVSGLKCVAHLLSIRDSFNWDDISQLFGVLLSFMTDSRIKVRRQSHSCIRDTL
LNFQGTPALAPASEAITNSFEKFLLLAGGSNAVASTDGPKGAQHVLYILDALKECLPLLS
FKCVTAILKYFKTLLELRQPVVTRRVTDSLKVICLHPGLQVPAEPLLDLLCSLALYASTN
ETSADNMTFTASLLDVGMKKVYSLNRQICVVKLPIVFSTLKDILASEHEEAIFAATQALK
NSINSCIDESLIKQGVDQITINKNAETRKCGPTVIEKVCAIIESLLDYHYSAVWDMVFQV
VSTLFDKLGNYSSYFMRGTLKNLADMQRLPDEDFPYRKQLHESLGSALGAMGPETFLSFL
PLKLEVDDLSEVNVWLFPILKQYTVGARLSFFTESVLSMVGLIKKKSRQLELDGRIISAR
SADALVYSLWSLLPSFCNYPLDTAESFQDLEKALCGALSEECDIRGIVCSALQVLIQQNK
RIMEEQDDLTVTEVGIAEQHAIARYTLQVATDNLRVLRSSARNLLTVLSGILLESPKDDG
GLLQSTIREFSSIADKEVVKRIYLKTMQKLLAVTQKATKADNSRDSISMRIDDSSNDSRA
RLFDLAISLLPGLDGEQINVLYSAVKPALQDMEGLIQKRAYKVLSIILQRYDGFITPRFG
ELLQLMIDVLPSCHFSAKRHRLDCIYCLIVHIPKDSEQRRHEILTSFLTEIILALKEVNK
RTRNRAYDVLVQIGHTFGDEENGGKKENLYQFFNMVAGGLALESPHMISAAMKGVARLAY
EFSDLVSIAYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSQAEGLQMFLGSVVEGLLR
WQDDTKNHFKAKVKHILEMLVKKCGLDAVKAVMPEEHMKLLTNIRKIKERGERKHAASSD
ETKSHMSRATTSRISRWNHTKIFSDFSDGETENSDGEYMDTKTVSGRHSKFSSQLKPKAS
LRSKIIHRSDKSLPEDLFDQLEDEPLDLLDRYKTRSALRSTAHLKRKQESDDDPEIDSEG
RLIVREGGKPKKEKLSNPDSDARSEAGSFKSLNSKKTQKRRKTSNSGWAYTGSEYASKKA
GGDVKRKDKLEPYAYWPLDRKMMSRRPEHRAAARKGMASVVKMTKKLEGKSASAALSMKL
IKSNSQKKGNKRKSR
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcatcgaacttgatgccccgtcactctccttccctgagaatgatttctgcgac
tcaattctctcacgctactccacctccacccaagacgaccaccaccacctctgcgccata
atcggcaccatgtcacaagaactcaaagaccaaaacctcccttgcacacctatcgcttac
ttcggcgccgcatgctcctccctagaccgcctctcctcctcctactctgatccttcccct
tacgtgatcgattctcttattaccatcctctctctagctcttcctcgaatttcaattcca
atattgaagaaaaaaagagaactggtttccaatgttgttgtgcgggttttgaaattaaat
tattctgttacagctggagctgttgtttcgggattgaaatgcgtggctcatttgttgagt
atcagagatagttttaattgggatgatatttctcaattattcggagtcttattaagtttc
atgaccgattctcgcataaaggtgagaaggcaatcccactcttgtatccgtgacaccttg
ctaaattttcaaggtacaccagcattagctccggcgagtgaagcaatcaccaattctttc
gaaaagtttcttcttcttgccggtggatccaatgcagtagcttctactgatgggcctaaa
ggagcccaacacgttctatatattctcgatgccttaaaagaatgtcttcctcttttatca
ttcaagtgtgtgactgcaattctcaagtactttaaaactctcctcgagctgcggcaacct
gttgttactaggcgtgtgactgatagtttgaaagtaatttgcttacacccgggtttacag
gttccggctgaaccattactcgacttgctatgttcactagctctttatgcttctacaaat
gagacgtctgcggataacatgacattcactgccagcttgttggatgttggaatgaaaaaa
gtttattccttaaataggcaaatttgcgttgttaagctaccaattgtattcagtacactc
aaagatattttggcgtctgaacatgaggaggccatctttgcggccacacaggcattgaag
aactcaataaatagttgtattgatgaaagcttgatcaagcagggagtagatcagattaca
atcaacaaaaatgccgaaactagaaagtgtgggcctacagttatagaaaaagtgtgcgca
atcattgaaagcttacttgattatcattacagtgcagtctgggacatggtatttcaagtg
gtttcgaccttgtttgataaattaggaaactattcttcttattttatgagaggaaccctt
aagaacttggcagatatgcagagattacccgatgaagattttccttaccggaaacagttg
cacgaatcccttggatctgctcttggtgcaatgggtcctgagacatttttaagcttccta
cctcttaaattagaggtcgatgacctatctgaagttaatgtttggctctttcctattctg
aagcagtatactgttggtgcccgtttaagcttttttacagagtcagttctgagtatggtt
ggcctgataaagaaaaaatctcgacagctggagctagatggaaggatcatctcagcgagg
agtgctgatgctcttgtatactctttgtggtccttattaccttccttttgcaactatcct
ttggatactgcagaaagtttccaggatctggagaaagctttgtgtggtgcacttagtgaa
gaatgtgatattcgtggaatagtttgttctgccctgcaggtccttattcaacagaataag
agaataatggaggagcaagatgatctaactgttacagaagttggtatagctgaacagcat
gctattgcccgctataccctgcaggttgcaacagataatttgagggtgcttaggtcttct
gctcgtaacttgttgactgttttgtctgggatcctcctggaatctccaaaagatgacggt
ggtcttctgcagtctacaattcgtgagttttcctcaatagcagataaagaagtagttaag
aggatctacttaaagacaatgcagaagcttttggctgtcacacaaaaggccacaaaagct
gataattctagagattccatttctatgcggattgatgattcatcaaatgactcgagagca
cggctatttgacctggcaatttcacttttgccaggattggatggtgaacagatcaatgtt
ttatatagtgcagtaaagcctgcattacaggatatggaaggtctgatccaaaagagggca
tacaaagttctttcaattattctccagaggtacgatggatttattacaccacgatttggg
gaactgcttcagctcatgattgatgtgctaccctcatgccatttctctgccaaacggcac
agacttgattgtatttactgtctaatagttcatatccccaaggactcagagcagaggagg
catgaaatccttacttctttccttactgagataatacttgctctgaaagaggttaacaaa
agaacaagaaatagagcttacgatgtgcttgtccaaattggtcatacctttggagatgaa
gagaatggcggaaagaaagaaaacttgtatcaattttttaacatggttgctggaggcctg
gctcttgaaagtcctcatatgatcagtgcagcaatgaaaggtgtagctcgtctggcatac
gagttttcagacctggtttctattgcttacaagttgcttccatccacatttctccttctg
cagagaaagaacagggagattatcaaagctaatttaggtttgttgaaggtactagtggcc
aaatcacaagctgaagggctgcaaatgttcctggggagtgtggtggaaggcttgctgaga
tggcaagatgacaccaaaaaccacttcaaagctaaggttaagcatatcctggaaatgcta
gtcaagaaatgtggtctggatgctgtgaaggcagtgatgcctgaagaacatatgaaactc
cttactaacatacggaagataaaggagcggggagagaggaagcatgcagcaagctctgat
gaaactaaatctcatatgtcaagagctactacatccaggataagcagatggaaccatact
aagatcttctctgattttagtgatggggagacagagaacagtgatggtgaatatatggat
acaaagacagtttcaggtcggcatagcaagttttcctcccagctcaaacccaaagcttca
ctaaggtccaaaataatacacaggtcagacaagagcttgccagaagacttgtttgaccag
ttagaagatgagccacttgacttgcttgatcggtacaaaacacgatcagccctccgatca
accgcgcatcttaaaagaaagcaggaatcagatgatgatccagagattgactctgaaggg
cggctgatagttcgtgaaggagggaaacctaagaaggagaagctctccaaccccgattca
gatgcgaggagtgaagcaggcagtttcaagtcactgaactccaagaaaactcagaagcgc
aggaaaacttcaaattctgggtgggcttacactggaagtgaatatgccagcaagaaagct
ggtggggatgtgaagaggaaggacaagcttgagccatatgcatattggcccctggatcgc
aagatgatgagtcggagaccagagcatcgtgcagctgctaggaaaggtatggctagtgtt
gtaaaaatgaccaagaagcttgagggcaagagtgcttcagctgcgctgtctatgaagctc
atcaaatctaacagtcagaagaaaggcaacaagagaaagagcaggtga
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