Populus trichocarpa (black cottonwood): 18100308
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Entry
18100308 CDS
T01077
Name
(RefSeq) oligouridylate-binding protein 1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18100308
03041 Spliceosome [BR:
pop03041
]
18100308
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
18100308
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
18100308
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_PARP14_3
RRM_5
RRM_7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
18100308
NCBI-ProteinID:
XP_006381594
UniProt:
U5GAP4
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All DBs
Position
6:complement(11628260..11633003)
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AA seq
412 aa
AA seq
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MMQQQRLKQQAMMQYLHPALLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTDPLL
QEVFSNTGPIEGCKLIRKDKSSYAFVDYFDRRSAALSILTLNGRHLFGQPIKVNWAYASS
QREDTSGHYNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQKTGRSRGFGFVSFRNQ
QEAQNAINDLNGKWLGSRQIRCNWATKGANTNDDKPSTDAKSIDLTNGTSEDGQERNNDD
APENNPQYTTVYVGNLAPEVTSVDLHRHFHMLGAGTIEDVRVQRDKGFGFVRYSTHAEAA
LAIQMGNARIMYGKPIKCSWGSKPTPPGTSSTPLPPPAAGHMPSLSAAELAVAAYEQQMA
LSKYGAPALMHPQGHHALKQAVMGMGTVGSSQAIYDGGFQNAATTQQLMYYH
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaacagcagaggctaaaacaacaggccatgatgcagtatcttcatcctgctctc
ctagctgctcctcagatagagcctatcttgagtggaaatctgcctcctggctttgattca
agtacttgccgcagtgtgtatgtaggaaacatccacccacaagttacagatccccttctt
caagaggttttctcaaacactggacctattgaaggatgtaagctcattcggaaagataag
tcatcctatgcctttgtggattactttgatcgcagatccgccgctctttccatattgacc
cttaatggaaggcatctgtttgggcagcctattaaagttaattgggcttatgctagtagt
cagagagaggatacatcaggtcattataatatctttgttggtgatcttagccctgaagtt
acagatgctacattgtatgcatgtttctctgcatatcctagttgttcagatgcaagggtt
atgtgggaccagaagactggtcgttctagaggatttggatttgtttctttcaggaatcag
caggaggctcaaaatgcaattaatgacttaaatggaaagtggcttgggagcagacaaatt
cggtgtaattgggccaccaaaggtgccaatactaatgacgacaagccaagtactgatgcc
aaaagtatagatctaacaaatggaacatcagaagatggtcaggaaaggaataatgatgat
gctccagagaacaatcctcagtataccacagtttatgttggcaatcttgctcctgaggtt
acttctgttgatctacatcggcacttccatatgcttggtgctggaactattgaagatgtg
cgggtgcaacgtgacaaaggttttgggtttgtgagatacagcacccatgctgaagcagct
ctggctattcagatgggaaatgctcgaattatgtatggaaaaccaattaagtgttcatgg
ggtagcaagcccactcccccagggacaagctctacccctcttcccccaccagctgctgga
catatgccaagcctttcagctgctgaacttgcagttgcagcctatgaacagcagatggca
ttgagcaaatacggtgcaccggcccttatgcatccacagggtcatcatgcccttaagcag
gcagtcatgggaatgggtactgttggaagtagccaggcaatttatgatggtgggttccag
aatgctgcaacaacacagcagctaatgtactaccactaa
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