Populus trichocarpa (black cottonwood): 18100383
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Entry
18100383 CDS
T01077
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
pop03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18100383
03083 Polycomb repressive complex
18100383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
18100383
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
18100383
Histone modification proteins
HAT complexes
HATB complex
18100383
HDAC complexes
Sin3A-HDAC complex
18100383
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
18100383
PRC2.2
18100383
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
18100383
Heterochromatin formation proteins
Other heterochromatin formation proteins
18100383
Chromatin remodeling factors
NuRD complex
18100383
NuRF complex
18100383
NuRF complex (fruit fly)
18100383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_IFT122_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
eIF2A
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_1st
DUF3798
Motif
Other DBs
NCBI-GeneID:
18100383
NCBI-ProteinID:
XP_024460298
LinkDB
All DBs
Position
6:complement(13294100..13301441)
Genome browser
AA seq
498 aa
AA seq
DB search
MEAAAAAPHVPKKRGRKPKPKEDQQQQQQSAGPKMKEGKKAHQHSVDDKYTQWKSLVPVL
YDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKSRVA
AAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQP
NRHAVLGATNSRPDLILTGHLDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT
DPATKSPGSGGSIIKKAGDGNDKATDGPSVGPRGIYQGHEDTVEDVAFCPSSAQEFCSVG
DDSCLILWDARDGTNPAIKVEKAHNADLHCVDWNPHDDNLILTGSADTSVCMFDRRNLTS
NGVGSPVYKFEGHNAAVLCVQWSPDKASVFGSSAEDGLLNIWDYEKVGKRSERLTRALNS
PAGLFFQHAGHRDKVVDFHWNASDPWTLVSVSDDCDTTGGGGTLQIWRMSDLIYRPEDEV
LAELEKFKSHVVSCASKP
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgctgctgctgctcctcatgtgccaaagaagagaggccgaaaacccaagccc
aaagaagatcagcaacagcaacagcaaagtgctggtcccaaaatgaaagagggaaagaag
gcacaccaacactctgttgatgacaagtacactcagtggaagtctttggttcctgttctt
tatgactggcttgctaatcacaacctcgtttggccttctctctcttgccggtggggtccg
cagcttgagcaagctacttacaagaatcgccagcgcctctatctttccgagcagactgat
ggtagtgttccaaatactctggtcattgcaaattgtgaagttgtcaagtctagggttgct
gccgcggaacacatatctcagtttaatgaagaagcacgctctccatttgttaagaagtac
aagaccatcatacaccctggagaggtaaatagaatcagagaactcccacagaatagtaag
atagtggccactcatactgacagccctgatgttcttatatgggatgttgaagcacagcct
aaccgccatgctgttcttggagctacaaactctcgtccagatttgattttgactggacat
ctagacaatgctgaatttgctcttgcaatgtgcccaactgaaccctatgtgctttctgga
gggaaggacaagtcagtagttttgtggagtattcaggatcatataacatcatctgccact
gacccagcaacaaagtctccaggatctggtggatcaatcattaaaaaggctggggatggc
aatgataaagccactgatggcccttctgttggaccacgaggtatatatcaggggcatgag
gatacagttgaagatgtggcattctgtccatccagtgcgcaggagttttgtagtgtagga
gatgactcttgccttatattatgggatgctcgagatggcactaacccagctatcaaggtt
gaaaaggcacataatgctgatcttcactgtgttgattggaaccctcatgatgataacctc
attttaactgggtcagcagatacttctgtttgcatgtttgatcgacggaacctcacttct
aatggagttggttcacctgtctataaatttgagggtcacaatgctgctgttctctgtgta
cagtggtctccagataaggcttctgtgtttgggagttctgcggaggatggtctcttaaac
atttgggattatgagaaggttggcaaaaggtctgagcgtctgactagagccctgaattcc
cctgcaggattgtttttccagcatgctgggcacagggacaaggttgttgacttccattgg
aatgcatctgatccttggacattggttagtgtgtctgatgactgtgatacaactggggga
ggagggacattgcagatatggcgcatgagtgatttgatctacaggccagaagatgaggtt
ttggcagagcttgagaagttcaagtcacatgtggtttcctgtgcttcgaagccttga
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integrated database retrieval system
