Populus trichocarpa (black cottonwood): 18100405
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Entry
18100405 CDS
T01077
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
18100405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
18100405
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
18100405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
18100405
NCBI-ProteinID:
XP_006381708
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All DBs
Position
6:complement(14250439..14264379)
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AA seq
1105 aa
AA seq
DB search
MPRQKSILSFFQKPSQPSQSSDAGERTDGRQAPLFSAKQHNQNVSQPAIHGPVDSSIEIR
GTDTPPEKVPRQILPVNIKENEEAKVASLFSSIMHKFVKVDDREKPNGRNQVHSANVCST
SVTFTIPKELPQHGMDTLYSEKDNGFSSSGMVDQTSVLNIESVNDVPGPHTPGMRPLVPR
LKRILEDVPKFEDKNGCSFLNSSKRVKPLQDPASLIKNHEEISNSTSKFEWLDPAQIRDA
NRRRPNDPLYDKKTLYLPPDALKKMSASQKQYWTVKSQYMDVLLFFKVGKFYELYELDAE
IGHKELDWKMTLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRVEQLETSDQAKSRGAN
SVIQRKLVQVVTPSTTTGHNMGPDAVHLLAIKEGNYGVDNGATAYGFAFVDCAALRVWVG
SINDDASHAALGALLMQISPKEVIYENRELSRGAQKELRKYSLIGSTALQLSPVLPGTDF
VDASEVKNLIQSKDYFKWSTNPWNHALDSIMHQDISLCALGGLIGHLSRLMFDDVLRNAD
ILPYQVYKGCLRMDGQTLVNLEVFSNSADGGSSGTLFNYLDNCVTSSGKRLLRNWICHPL
KHVEGINNRLDVIENLMARSEIMLVIAQYLRKLPDLERMLGRVKVSFQASGSLALPLISK
KMLKQRVKVFGSLVKGLRNGMDLLLLLLKEEQLISSLSKNFKLPELLGSNGLEKFLVQFE
AAVDSEFPNYQNRDVTDSEAGMLSVLIELFIEKAAQWGEVIHAINCIDVLRSFTVTASMS
CGAMCRPVILPDSKSISFCEGEGGPVLKIKGLWHPFALGENGLPVPNDVFLGEDSDSQHP
RTVLLTGPNMGGKSTLLRATCLAVILAQLGCFVPGEKCVLSLADIIFTRLGATDRIMTGE
STFFIECTETASVLQNATQDSLVLLDELGRGTSTYDGYAIAYAVFRHLVEKINCRLLFAT
HYHPLTKEFASHPHVSLQYMACAFKSKPESYSKSDRDLVFLYRLASGACPGSYGLQVATM
AGIPEHVVEAASHAGQLMKNSTGESFKSSEWRSEFSTLHEEWLKTLVNVSRIRDCNFDDD
DVYDTLFCLWHELKSSYESCSSKSR
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccaaaaatcgatactctcgttcttccaaaaaccctcgcagcccagtcagagc
tccgacgccggagaaaggaccgatggtcggcaagctcctctgttctcggcgaagcaacat
aatcaaaacgtgtctcaacctgcgattcatggaccggtggactcgtctattgaaattaga
ggaactgacacgccaccagaaaaggtgccacgtcagatattaccggtgaacatcaaggag
aacgaggaggccaaagttgcttcgcttttctcgagcataatgcataagttcgttaaggtc
gatgacagagaaaaacctaatgggaggaaccaggttcattctgctaatgtttgctctaca
tctgttacatttactatcccaaaagaattgcctcagcatggaatggatacactgtactct
gagaaagacaatggttttagttccagtggcatggttgatcaaacgagtgtcttgaatatt
gaaagtgtaaatgatgttcctgggccacatacaccaggcatgcgacccctagttcctcgt
ctgaagagaattctagaggacgttcctaagtttgaggataagaatggttgttccttccta
aactctagcaaaagagtgaaaccactacaggacccagcttccttgatcaaaaatcatgag
gaaatatctaattcaacaagcaagtttgaatggcttgaccctgcccaaatcagggatgct
aataggagaaggcccaatgatcctctctatgacaaaaagacgctgtacttaccacctgat
gcattgaagaaaatgtcagcttctcaaaagcaatactggactgtcaaatctcagtacatg
gatgttctacttttctttaaagtgggaaaattctatgagctctatgaactggatgctgaa
attggtcacaaagagcttgattggaaaatgacattaagcggtgtggggaaatgtcggcag
gttggtatatctgaaagtgggattgacgatgctgttgaaaagctggtagctcgtggatat
aaagttggaagagtggagcaattggaaacatctgatcaagcaaaatctaggggtgcaaat
tctgtaatccaaagaaaattggtacaagttgtcaccccatcaaccacaactggacataat
atggggcctgatgctgttcaccttcttgccataaaagagggaaactatggggtggataat
ggtgcaactgcttatgggtttgcttttgttgattgtgctgctctacgagtttgggttgga
tcaatcaatgatgatgcgtcacatgctgctttgggggcattattgatgcaaatttcacct
aaggaagtcatatatgaaaatagagagctttccagaggcgctcagaaagaacttaggaag
tactcattaataggttctacagcactgcaattgtcaccagtgctgccaggcactgatttt
gtggatgcttctgaagttaaaaatttgattcaatcgaaggattactttaaatggtctaca
aatccatggaaccatgcacttgacagtataatgcaccaggatatatctctatgtgctctt
ggcgggcttattggtcatctatccagattgatgtttgatgatgttttaaggaatgcagat
attctaccctaccaagtttataagggttgccttagaatggatgggcagactctagtaaat
ctggaggtttttagtaacagtgctgatggtggttcatcaggtactttgtttaactatctt
gataactgcgtgacatcatctggtaagcggcttttgaggaattggatctgccatccactg
aaacatgttgaaggcattaataataggcttgatgtaattgaaaatctaatggctcgttca
gaaattatgttagttattgctcaatatcttcgcaagcttccagatttagaaagaatgctt
ggacgagttaaggttagctttcaggcatcaggttctcttgcactgcccttgattagcaaa
aaaatgttgaaacaacgagtgaaagtgttcgggtctctggtgaaagggcttcggaatgga
atggatttgttattgctattactgaaggaagagcaactaatttcatcattatcaaaaaat
tttaaacttccagagcttcttggtagtaatgggcttgaaaaattccttgtgcaatttgaa
gcagctgtagatagtgaattcccaaactaccagaatcgtgatgtgacagattcagaggct
ggaatgctttctgtgctgattgagttatttattgagaaagctgcacagtggggtgaagtc
attcatgcaatcaattgtattgatgtgcttagatctttcacagtcacagcaagcatgtca
tgtggagctatgtgtagacctgttattttgcctgattcaaaatccatttctttctgtgag
ggggaaggggggcctgtacttaagattaaagggttatggcacccatttgctctcggagag
aatggattgcctgtcccaaatgatgtgttccttggtgaggattcagatagccaacatccc
cgcactgtgttgctgactggaccaaatatgggtggaaaatcaacacttctgcgtgccaca
tgtctagctgttatactagcacagcttggttgttttgttcccggtgagaagtgtgttctc
tcacttgctgacataatttttacacggcttggtgccactgatcgaataatgacaggcgag
agtacattcttcattgagtgcacagaaacagcttcggtgcttcaaaatgccactcaagat
tcccttgtccttcttgatgaactgggtcgaggaacaagcacttatgatggatacgccatt
gcatatgctgtattccgccatcttgttgagaagataaactgtcgattgctttttgcaaca
cactatcacccgctcacaaaagaatttgcttctcatccacatgtttcattacaatacatg
gcttgtgcattcaagtcaaaacctgaaagctattctaaaagcgaccgggaccttgtcttc
ttgtaccggcttgcatctggagcatgcccagggagctacggattgcaagtggcaactatg
gctggcattccagagcatgttgttgaagctgcttcacatgctggtcaactgatgaaaaat
tcaactggagaaagtttcaagtcaagtgagtggaggtctgagttctcaactctccatgaa
gagtggttgaagaccctggtaaatgtctcacgaatcagagattgtaattttgatgatgat
gatgtttatgacacattgttttgcttgtggcatgagttgaagagctcgtatgaatcttgt
agctcaaagagtagatag
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integrated database retrieval system
