Populus trichocarpa (black cottonwood): 18100495
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Entry
18100495 CDS
T01077
Name
(RefSeq) replication protein A 32 kDa subunit B
KO
K10739
replication factor A2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
pop03440
Homologous recombination
pop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
18100495
03420 Nucleotide excision repair
18100495
03430 Mismatch repair
18100495
03440 Homologous recombination
18100495
03460 Fanconi anemia pathway
18100495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
18100495
03400 DNA repair and recombination proteins [BR:
pop03400
]
18100495
DNA replication proteins [BR:
pop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
18100495
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
18100495
MMR (mismatch excision repair)
18100495
DSBR (double strand breaks repair)
HR (homologous recombination)
18100495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPA_C
tRNA_anti-codon
RMI2
TrmB
CDC24_OB3
DUF5818
Mnd1
Motif
Other DBs
NCBI-GeneID:
18100495
NCBI-ProteinID:
XP_024459319
LinkDB
All DBs
Position
6:16731363..16737029
Genome browser
AA seq
275 aa
AA seq
DB search
MHGGSEFDGSAAAFMGGGFMPTQSALPSSSDSSSFSISKNREARCLFPLTVKQINNLTSN
DESNLIIDGAEVNNVTIVGRVSHKEDKASEYSFLIDDGTGQIECTQWVQESLDTEQMGEI
LVGMYVRVHGHLRGLQGRRFLNVFSIRPVTDFNEVPNHFIECIYVHFYNTRIRGVTAQPP
VANSTNTSLKGYQAAPPYQSSAYSSADGLNNASQMILNFLQQPSYLTTEGAHYDAIAGQL
NIPTDKLKEVLQVLVDNGLVYTTINDDYYKSTVNA
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaggcagcgaattcgatggaagcgcagcagccttcatgggcggcggattcatg
cctactcaatccgctctgccttcttcttctgattcctcctccttctccatctccaaaaat
cgggaggcgcggtgcttgtttccgctgactgtgaagcagataaacaacctaacaagcaat
gatgaatctaatctcatcattgatggtgctgaagttaacaatgttacaattgtggggagg
gtatcccacaaggaagacaaggccagcgagtactcatttttaattgatgatgggactgga
cagattgaatgtacccaatgggttcaagaaagcttagatacagaacaaatgggggaaatc
ttagttggcatgtatgttcgtgttcatggacacttaagagggctgcaaggcagaaggttc
ttaaatgtcttctccattaggcctgttacagactttaatgaggttccaaaccacttcatt
gagtgcatatatgtccacttctacaataccaggatacggggtgtcactgctcagccccca
gtggcaaattcaacaaatacttctttaaagggataccaagctgccccgccatatcaatct
tctgcctattccagtgccgatggactgaacaatgctagtcagatgatattaaattttttg
cagcaaccttcgtatctcaccaccgagggagctcactatgatgccattgccggtcagcta
aacattccaacggataagctcaaggaagtactacaggtgcttgttgacaatggcctcgtt
tacacaactatcaatgacgattactataagtccacagttaatgcttga
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